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The map label for this gene is ytlP

Identifier: 16080048

GI number: 16080048

Start: 3065751

End: 3066302

Strand: Reverse

Name: ytlP

Synonym: BSU29960

Alternate gene names: 16080048

Gene position: 3066302-3065751 (Counterclockwise)

Preceding gene: 16080050

Following gene: 16080047

Centisome position: 72.74

GC content: 43.48

Gene sequence:

>552_bases
ATGCCAGATATACGGCCTCATTATTTCATCGGCGTTCCCATACCTGAGGGAATTGCAAATCCGATCTACCAGGCTGCGAA
AAACGAACCGATATTGACGTTTCAAAAATGGGTGCACCCGCTTGACTATCATATCACGTTAATTTTTCTCGGAGCGGCGG
ATGAGACACAAATAAAGAAGCTTGAAGGTTCGCTAGCAGAGATTGCTTCAGAAATTGATCCATTTTCAATTAAGTTTGGC
AAGATAGATGTATTCGGCGACCGCAGAAAGCCGCGCGTTTTACATCTGGAGCCAAAGAAAAACAAAACGCTTGATAGACT
GCGGGAACATACGAAGCAGGCTGTACTTCAGGCCGGCTTTCAAGTGGAAAAAAGACCGTATCATCCTCATATGACGCTGG
CAAGAAAATGGACAGGCGAAGATGGATTTCCAGCTCATGTTCCGTTTGAAAGCGGCGAGGTTTCGATGATGGCTGAACGA
TTTTCGCTCTTTCAAATACACTTGAACCAATCACCAAAATACGAGGAAATATTCAAATTTCAATTATCTTAA

Upstream 100 bases:

>100_bases
ATAAACGTTTGTGCGAGAGTGTTTTCATACACTGTTCCTCTATCCGCACAGCCTCTTTATTGATAAAATAATAGCTGTCA
AAGAAGGGAGTGTCAGACGG

Downstream 100 bases:

>100_bases
TTCATTGCGGAGTGGAGAAACAAACATGGCACAAATCATCAAAATTCATGATTATATATCGAGATATGAGCTTGATCCGT
ACCATTATATCAACCAGTTT

Product: 2'-5' RNA-ligase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MPDIRPHYFIGVPIPEGIANPIYQAAKNEPILTFQKWVHPLDYHITLIFLGAADETQIKKLEGSLAEIASEIDPFSIKFG
KIDVFGDRRKPRVLHLEPKKNKTLDRLREHTKQAVLQAGFQVEKRPYHPHMTLARKWTGEDGFPAHVPFESGEVSMMAER
FSLFQIHLNQSPKYEEIFKFQLS

Sequences:

>Translated_183_residues
MPDIRPHYFIGVPIPEGIANPIYQAAKNEPILTFQKWVHPLDYHITLIFLGAADETQIKKLEGSLAEIASEIDPFSIKFG
KIDVFGDRRKPRVLHLEPKKNKTLDRLREHTKQAVLQAGFQVEKRPYHPHMTLARKWTGEDGFPAHVPFESGEVSMMAER
FSLFQIHLNQSPKYEEIFKFQLS
>Mature_182_residues
PDIRPHYFIGVPIPEGIANPIYQAAKNEPILTFQKWVHPLDYHITLIFLGAADETQIKKLEGSLAEIASEIDPFSIKFGK
IDVFGDRRKPRVLHLEPKKNKTLDRLREHTKQAVLQAGFQVEKRPYHPHMTLARKWTGEDGFPAHVPFESGEVSMMAERF
SLFQIHLNQSPKYEEIFKFQLS

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTLP_BACSU (O34570)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   F69995
- RefSeq:   NP_390874.1
- ProteinModelPortal:   O34570
- SMR:   O34570
- EnsemblBacteria:   EBBACT00000002062
- GeneID:   937293
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU29960
- NMPDR:   fig|224308.1.peg.2999
- GenoList:   BSU29960
- GeneTree:   EBGT00050000001352
- HOGENOM:   HBG699408
- OMA:   RAFFAIS
- ProtClustDB:   CLSK887736
- BioCyc:   BSUB:BSU29960-MONOMER
- GO:   GO:0005622
- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097
- TIGRFAMs:   TIGR02258

Pfam domain/function: PF02834 2_5_RNA_ligase; SSF55144 Cyc_nuc_Pdiester

EC number: NA

Molecular weight: Translated: 21147; Mature: 21015

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDIRPHYFIGVPIPEGIANPIYQAAKNEPILTFQKWVHPLDYHITLIFLGAADETQIKK
CCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEEEEEECCCCHHHHH
LEGSLAEIASEIDPFSIKFGKIDVFGDRRKPRVLHLEPKKNKTLDRLREHTKQAVLQAGF
HHCHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
QVEKRPYHPHMTLARKWTGEDGFPAHVPFESGEVSMMAERFSLFQIHLNQSPKYEEIFKF
CCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHHHHEEEEEEECCCCCHHHHEEE
QLS
ECC
>Mature Secondary Structure 
PDIRPHYFIGVPIPEGIANPIYQAAKNEPILTFQKWVHPLDYHITLIFLGAADETQIKK
CCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEEEEEECCCCHHHHH
LEGSLAEIASEIDPFSIKFGKIDVFGDRRKPRVLHLEPKKNKTLDRLREHTKQAVLQAGF
HHCHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
QVEKRPYHPHMTLARKWTGEDGFPAHVPFESGEVSMMAERFSLFQIHLNQSPKYEEIFKF
CCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHHHHEEEEEEECCCCCHHHHEEE
QLS
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377