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The map label for this gene is ytxE

Identifier: 16080024

GI number: 16080024

Start: 3042566

End: 3043294

Strand: Reverse

Name: ytxE

Synonym: BSU29720

Alternate gene names: 16080024

Gene position: 3043294-3042566 (Counterclockwise)

Preceding gene: 16080025

Following gene: 16080020

Centisome position: 72.19

GC content: 43.07

Gene sequence:

>729_bases
ATGAAGCTTAGAAGAGAACGTTTTGAAAGAAGGAATGGAAGCGGAAAAAACAGTCAATCTTCATCCAGCTGGATGGTAAC
CTTTACAGATCTGATCACCTTGATCCTTGTGTTCTTTATTTTACTCTTTTCGATGTCCCAAATCGATCTGCAAAAATTCA
AAGCGGCAGTGGACTCGATCCAGAAGGAAGGCAACGGGCTTCAGCCGGACCAAACATCCATAGAAAAAAAGAATACATCC
CCATCTGATACGAAGAAGCAAGAGGATCAGCAGGATCAGCTTCTCAAGAAAGTAAATACATATATAAAAGACAATCATTT
GAAGGCCCAAATGACAGCCAAACGGGATGAACGCGGTGTCGTGCTCGTTCTTCAGGAGGCTGTGCTGTTTGATACAGGTG
AGGCAAAGGTGCTGAAAAATGCCGAAACACTTCTTCACCAAATTGCCGTTCTTCTTCAAACAATTCCAAATGACATTCAG
GTTGAGGGACATACAGACAGCCGAAACATTTCGACATACCGATACCCGTCGAACTGGGAGCTATCAGCAGCACGGGCAAG
TGGAGTGATTCAATACTTCACGTCTAAAGAGAAGCTTCCCTCCAAGCGCTTTATTGCTGTCGGTTATGCGGATACAAAGC
CAGTAAAGGATAACAAGACAAATGAACACATGAAGGAAAATCGGCGTGTGGAAATAGTGATTAAAAAATCAAAAACGACC
TCTTCGTAA

Upstream 100 bases:

>100_bases
AAAAACCCGCGCAACCTTGAAAGCCAGCTGGTCGTTTTCAGCTCACGGGAAGAATGGCAGAAGCAGCCAAAACAAGTAAA
AACAAAAAAGGGATCTGTAC

Downstream 100 bases:

>100_bases
AGGTCGTTTTTTACTTTGTTCTTTGCTGTTCAGAACGTATCGCATATAATGCTTTGCTGACAGTTTGGGCATTTTTTTCT
GTAATTTCAGGCTTGCGGGG

Product: flagellar motor protein MotS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKLRRERFERRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSIQKEGNGLQPDQTSIEKKNTS
PSDTKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGVVLVLQEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDIQ
VEGHTDSRNISTYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAVGYADTKPVKDNKTNEHMKENRRVEIVIKKSKTT
SS

Sequences:

>Translated_242_residues
MKLRRERFERRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSIQKEGNGLQPDQTSIEKKNTS
PSDTKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGVVLVLQEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDIQ
VEGHTDSRNISTYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAVGYADTKPVKDNKTNEHMKENRRVEIVIKKSKTT
SS
>Mature_242_residues
MKLRRERFERRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSIQKEGNGLQPDQTSIEKKNTS
PSDTKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGVVLVLQEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDIQ
VEGHTDSRNISTYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAVGYADTKPVKDNKTNEHMKENRRVEIVIKKSKTT
SS

Specific function: May be involved in some transport function

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTXE_BACSU (P39064)

Other databases:

- EMBL:   L17309
- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   S39642
- RefSeq:   NP_390850.1
- ProteinModelPortal:   P39064
- SMR:   P39064
- EnsemblBacteria:   EBBACT00000002798
- GeneID:   937315
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU29720
- NMPDR:   fig|224308.1.peg.2975
- GenoList:   BSU29720
- GeneTree:   EBGT00050000002674
- HOGENOM:   HBG740731
- OMA:   LFSMSQI
- PhylomeDB:   P39064
- ProtClustDB:   PRK06925
- BioCyc:   BSUB:BSU29720-MONOMER
- GO:   GO:0006810
- InterPro:   IPR006665
- Gene3D:   G3DSA:3.30.1330.60

Pfam domain/function: PF00691 OmpA; SSF103088 OmpA/MotB_C

EC number: NA

Molecular weight: Translated: 27596; Mature: 27596

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11e2ab30)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRRERFERRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSI
CCCHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKEGNGLQPDQTSIEKKNTSPSDTKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGV
HHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCE
VLVLQEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDIQVEGHTDSRNISTYRYPSNWE
EEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCC
LSAARASGVIQYFTSKEKLPSKRFIAVGYADTKPVKDNKTNEHMKENRRVEIVIKKSKTT
CHHHHHHHHHHHHHCHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEECCCCC
SS
CH
>Mature Secondary Structure
MKLRRERFERRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSI
CCCHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKEGNGLQPDQTSIEKKNTSPSDTKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGV
HHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCE
VLVLQEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDIQVEGHTDSRNISTYRYPSNWE
EEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCC
LSAARASGVIQYFTSKEKLPSKRFIAVGYADTKPVKDNKTNEHMKENRRVEIVIKKSKTT
CHHHHHHHHHHHHHCHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEECCCCC
SS
CH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934817; 9387221; 9384377