Click here to switch to the map view.

The map label for this gene is ytmO

Identifier: 16079985

GI number: 16079985

Start: 3003345

End: 3004349

Strand: Reverse

Name: ytmO

Synonym: BSU29330

Alternate gene names: 16079985

Gene position: 3004349-3003345 (Counterclockwise)

Preceding gene: 16079986

Following gene: 16079984

Centisome position: 71.27

GC content: 46.77

Gene sequence:

>1005_bases
ATGATCCGCTTAAGTATTTTAGACCAAAGCTTGATTGGTGAAGGGGAGACAGCAGCTGATACATTACAGCATACAGTGAA
ATTGGCACAAATGGCTGAAGAATGTGGATATCACCGATTTTGGGTGGCCGAACATCACAACAATGATGAGATTGCAGGGT
CTGCACCCGAGGTTCTTTTAGGCTATCTTGCTGCAAGCACAAGAAAAATTCGTTTAGCATCAGGCGGAGTGATGCTGCAG
CATTACAGCTCTTATAAAGTAGCGGAGCAATTCCATCTTCTATCAGCGTTAGCTCCCGGCCGTATAGATCTTGGAGTGGG
CAAAGCGCCCGGCGGGTTTCAGCTGTCCACAGACGCGCTGCAGGCCGAATATAAAAAACCGGTGCGTCAGTTTGATGAAA
AACTGGAGGAGCTTACTCATTTCGTTCGGGATGATTTTCCTGATACCCACCGCTATGCCGCATTGCGTCCTAGGCCGCAG
GTTGATCGGAAGCCGGGTATTTTTCTATTGGGAGGAAGCACAGAGAGTGCCATTTCTGCTGCAAAACTGGGAATCTCTTT
TGTCTTTGCTTACTTTATTAACGGTGAAGAGGAAGTGCTGAAGGAAGCCCGCCGAGCATTTGACGCGCATCTCCCGCCAG
GATCTGAGGCTGAATTTCATCTTGCCCCCGCTGTTTTTGCGGCACATACAAAAGAAGAAGCGGAAAAACATATTGTGTCG
CGTGAATCGATAAAAGTGGTTTTGAAAGACGGGCGTAAGGTCAACGTCGGTTCCCGCGAACAGGCTGAGGCCTATCTGGA
AAACGTCACAGAGCCCTATGACATCATCGTGCAAAAAACCGGGATTATTGCCGGAACAAAGGAAGAAGTGGCAGAAGAAT
TAACACGTTTATCAGGCACATACAAAATCAATGATTTTGTTATTTTTACACCGATCAAAAATGCTGTAGAAAAACAGCTG
TCTTATCAGCTGCTGAGCGATGCAGTTTTAGCTGCAAAACGTTAA

Upstream 100 bases:

>100_bases
TCTTCCGCCATACCAAAAAAGACAGAACGAGGCAGTTTCTCCGCCGTGTTTCGCCGGAATATTTATTTGAACCAAAAGAA
CACATAAAGGAGCCGGTGAT

Downstream 100 bases:

>100_bases
GGAGGGACAGAAGAATGAGTGATGTTGTGAACATTGTGGTTTGGAGTAAAAAAGGCTGTTCGTATTGTGAGGAAGTCAAG
AATTATTTGAATGAAAAAGG

Product: monooxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MIRLSILDQSLIGEGETAADTLQHTVKLAQMAEECGYHRFWVAEHHNNDEIAGSAPEVLLGYLAASTRKIRLASGGVMLQ
HYSSYKVAEQFHLLSALAPGRIDLGVGKAPGGFQLSTDALQAEYKKPVRQFDEKLEELTHFVRDDFPDTHRYAALRPRPQ
VDRKPGIFLLGGSTESAISAAKLGISFVFAYFINGEEEVLKEARRAFDAHLPPGSEAEFHLAPAVFAAHTKEEAEKHIVS
RESIKVVLKDGRKVNVGSREQAEAYLENVTEPYDIIVQKTGIIAGTKEEVAEELTRLSGTYKINDFVIFTPIKNAVEKQL
SYQLLSDAVLAAKR

Sequences:

>Translated_334_residues
MIRLSILDQSLIGEGETAADTLQHTVKLAQMAEECGYHRFWVAEHHNNDEIAGSAPEVLLGYLAASTRKIRLASGGVMLQ
HYSSYKVAEQFHLLSALAPGRIDLGVGKAPGGFQLSTDALQAEYKKPVRQFDEKLEELTHFVRDDFPDTHRYAALRPRPQ
VDRKPGIFLLGGSTESAISAAKLGISFVFAYFINGEEEVLKEARRAFDAHLPPGSEAEFHLAPAVFAAHTKEEAEKHIVS
RESIKVVLKDGRKVNVGSREQAEAYLENVTEPYDIIVQKTGIIAGTKEEVAEELTRLSGTYKINDFVIFTPIKNAVEKQL
SYQLLSDAVLAAKR
>Mature_334_residues
MIRLSILDQSLIGEGETAADTLQHTVKLAQMAEECGYHRFWVAEHHNNDEIAGSAPEVLLGYLAASTRKIRLASGGVMLQ
HYSSYKVAEQFHLLSALAPGRIDLGVGKAPGGFQLSTDALQAEYKKPVRQFDEKLEELTHFVRDDFPDTHRYAALRPRPQ
VDRKPGIFLLGGSTESAISAAKLGISFVFAYFINGEEEVLKEARRAFDAHLPPGSEAEFHLAPAVFAAHTKEEAEKHIVS
RESIKVVLKDGRKVNVGSREQAEAYLENVTEPYDIIVQKTGIIAGTKEEVAEELTRLSGTYKINDFVIFTPIKNAVEKQL
SYQLLSDAVLAAKR

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To bacterial alkanal monooxygenase alpha and beta chains

Homologues:

Organism=Escherichia coli, GI1789551, Length=296, Percent_Identity=35.1351351351351, Blast_Score=159, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTMO_BACSU (O34846)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   H69996
- RefSeq:   NP_390811.1
- ProteinModelPortal:   O34846
- EnsemblBacteria:   EBBACT00000001105
- GeneID:   936618
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU29330
- NMPDR:   fig|224308.1.peg.2936
- GenoList:   BSU29330
- GeneTree:   EBGT00050000000501
- HOGENOM:   HBG366829
- OMA:   LEELTHF
- PhylomeDB:   O34846
- ProtClustDB:   CLSK887713
- BioCyc:   BSUB:BSU29330-MONOMER
- InterPro:   IPR011251
- InterPro:   IPR016048
- InterPro:   IPR019949
- Gene3D:   G3DSA:3.20.20.30
- TIGRFAMs:   TIGR03558

Pfam domain/function: PF00296 Bac_luciferase; SSF51679 Luciferase_like

EC number: NA

Molecular weight: Translated: 36944; Mature: 36944

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLSILDQSLIGEGETAADTLQHTVKLAQMAEECGYHRFWVAEHHNNDEIAGSAPEVLL
CEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHH
GYLAASTRKIRLASGGVMLQHYSSYKVAEQFHLLSALAPGRIDLGVGKAPGGFQLSTDAL
HHHHHCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCEECHHHH
QAEYKKPVRQFDEKLEELTHFVRDDFPDTHRYAALRPRPQVDRKPGIFLLGGSTESAISA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEEEECCCCHHHHHH
AKLGISFVFAYFINGEEEVLKEARRAFDAHLPPGSEAEFHLAPAVFAAHTKEEAEKHIVS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
RESIKVVLKDGRKVNVGSREQAEAYLENVTEPYDIIVQKTGIIAGTKEEVAEELTRLSGT
HHHHHHHEECCCEECCCCHHHHHHHHHHCCCCHHEEEEECCCEECCHHHHHHHHHHHCCC
YKINDFVIFTPIKNAVEKQLSYQLLSDAVLAAKR
EEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRLSILDQSLIGEGETAADTLQHTVKLAQMAEECGYHRFWVAEHHNNDEIAGSAPEVLL
CEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHH
GYLAASTRKIRLASGGVMLQHYSSYKVAEQFHLLSALAPGRIDLGVGKAPGGFQLSTDAL
HHHHHCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCEECHHHH
QAEYKKPVRQFDEKLEELTHFVRDDFPDTHRYAALRPRPQVDRKPGIFLLGGSTESAISA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEEEECCCCHHHHHH
AKLGISFVFAYFINGEEEVLKEARRAFDAHLPPGSEAEFHLAPAVFAAHTKEEAEKHIVS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
RESIKVVLKDGRKVNVGSREQAEAYLENVTEPYDIIVQKTGIIAGTKEEVAEELTRLSGT
HHHHHHHEECCCEECCCCHHHHHHHHHHCCCCHHEEEEECCCEECCHHHHHHHHHHHCCC
YKINDFVIFTPIKNAVEKQLSYQLLSDAVLAAKR
EEECCEEEECCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377