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The map label for this gene is ytbD

Identifier: 16079956

GI number: 16079956

Start: 2968824

End: 2970014

Strand: Direct

Name: ytbD

Synonym: BSU29040

Alternate gene names: 16079956

Gene position: 2968824-2970014 (Clockwise)

Preceding gene: 255767667

Following gene: 16079957

Centisome position: 70.42

GC content: 47.52

Gene sequence:

>1191_bases
ATGACTTCAGCCAATAAAAGCAATATTCCTGCACTACTGGCTTTGGCCGTAAGTGCATTCGCAATAGGGACAACTGAATT
TATCAGTGTCGGCCTTTTGCCGCTCATTGCTGATGACCTGGATATTCCCGTCACGACAGCAGGATTGACCGTTTCCCTTT
ATGCGCTCGGCGTTACATTTGGGGCACCTATATTAACTTCATTGACCTCAAGCATGTCACGTAAGACACTATTGCTTTGG
ATCATGTTTATTTTTATTGCCGGTAATACGATGGCAGCAACCGCTTCAAGCATCGGGATTTTACTAGCAGCACGTGTGAT
ATCGGCATTTTCGCACGGTGTGTTTATGTCGATCGGTTCGACAATCGCAGCGGATATTGTCCCGGAGGATAAAAGGGCTA
GCGCGATTTCAATTATGTTTACTGGCCTCACTGTGGCAACTGTAACCGGAGTTCCTTTTGGGACATTTATCGGCCAGCAG
TTCGGCTGGCGTTTCGCCTTTATGGTCATTATCGCCGTCGGAATCATTGCTTTCATTACAAATGGCATTCTTGTACCGTC
CAAATTACGAAAAGGGACGAAAACAACGATGCGGGATCAATTGAAGCTTGTGACAAACAGCCGGTTATTGCTTTTATTTG
TCATTACAGCGCTTGGATACGGAGGAACATTCGTTGTGTTCACGTATCTGTCTCCCCTGCTTCAGGAAGTAACAGGCTTC
AAAGCCGGGACTGTTGCAGTGATTCTGCTCGGATACGGAATAGCTATTGCTATCGGCAATATGATTGGCGGAAAGCTGTC
AAACCGAAATCCGATTGCCGCTTTATTCTATATGTTTATCGTACAGGCAATCGTTCTATTCGTACTGACATTTACAGCCC
CGTATCAAGCAGCAGGGCTCATTACCATTCTCTGTATGGGATTGCTGGCCTTTATGAACGTGCCCGGCCTTCAGGTGTAT
GTCGTCATGCTGGCTGAGCGTTTTGTCCCGAGTGCAGTTGACGTCGCATCCGCGATGAATATCGCTGCCTTTAATGCAGG
GATCGCGCTTGGGTCATACCTTGGCGGTGTGATCACCGATTCAATCGGATTGATTCATACCGCTTGGATAGGCGGATTAA
TGGTGGTCGGTGCAGTCATTTTAACAGGCTGGAGCCGCTTGATGGAAAAACGAGATCGGCAGGAAGCCTGA

Upstream 100 bases:

>100_bases
AATCACATTTGCCGGCTGATTTGAATCTGCTCTTTTTTATTTATATAGCTTACTCGGCAGAATTTCAATCATACAACACA
TCTTACAAAGGAGGAACATC

Downstream 100 bases:

>100_bases
CAATTTTAAAGGAGGAAATAAACATGACAACACATTTACAAGCAAAAGCAACACTTCATAATGGGGTAGAAATGCCTTGG
TTCGGCCTCGGCGTGTTCCA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTSANKSNIPALLALAVSAFAIGTTEFISVGLLPLIADDLDIPVTTAGLTVSLYALGVTFGAPILTSLTSSMSRKTLLLW
IMFIFIAGNTMAATASSIGILLAARVISAFSHGVFMSIGSTIAADIVPEDKRASAISIMFTGLTVATVTGVPFGTFIGQQ
FGWRFAFMVIIAVGIIAFITNGILVPSKLRKGTKTTMRDQLKLVTNSRLLLLFVITALGYGGTFVVFTYLSPLLQEVTGF
KAGTVAVILLGYGIAIAIGNMIGGKLSNRNPIAALFYMFIVQAIVLFVLTFTAPYQAAGLITILCMGLLAFMNVPGLQVY
VVMLAERFVPSAVDVASAMNIAAFNAGIALGSYLGGVITDSIGLIHTAWIGGLMVVGAVILTGWSRLMEKRDRQEA

Sequences:

>Translated_396_residues
MTSANKSNIPALLALAVSAFAIGTTEFISVGLLPLIADDLDIPVTTAGLTVSLYALGVTFGAPILTSLTSSMSRKTLLLW
IMFIFIAGNTMAATASSIGILLAARVISAFSHGVFMSIGSTIAADIVPEDKRASAISIMFTGLTVATVTGVPFGTFIGQQ
FGWRFAFMVIIAVGIIAFITNGILVPSKLRKGTKTTMRDQLKLVTNSRLLLLFVITALGYGGTFVVFTYLSPLLQEVTGF
KAGTVAVILLGYGIAIAIGNMIGGKLSNRNPIAALFYMFIVQAIVLFVLTFTAPYQAAGLITILCMGLLAFMNVPGLQVY
VVMLAERFVPSAVDVASAMNIAAFNAGIALGSYLGGVITDSIGLIHTAWIGGLMVVGAVILTGWSRLMEKRDRQEA
>Mature_395_residues
TSANKSNIPALLALAVSAFAIGTTEFISVGLLPLIADDLDIPVTTAGLTVSLYALGVTFGAPILTSLTSSMSRKTLLLWI
MFIFIAGNTMAATASSIGILLAARVISAFSHGVFMSIGSTIAADIVPEDKRASAISIMFTGLTVATVTGVPFGTFIGQQF
GWRFAFMVIIAVGIIAFITNGILVPSKLRKGTKTTMRDQLKLVTNSRLLLLFVITALGYGGTFVVFTYLSPLLQEVTGFK
AGTVAVILLGYGIAIAIGNMIGGKLSNRNPIAALFYMFIVQAIVLFVLTFTAPYQAAGLITILCMGLLAFMNVPGLQVYV
VMLAERFVPSAVDVASAMNIAAFNAGIALGSYLGGVITDSIGLIHTAWIGGLMVVGAVILTGWSRLMEKRDRQEA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily

Homologues:

Organism=Escherichia coli, GI1787947, Length=339, Percent_Identity=36.283185840708, Blast_Score=214, Evalue=6e-57,
Organism=Escherichia coli, GI1786595, Length=352, Percent_Identity=32.6704545454545, Blast_Score=169, Evalue=4e-43,
Organism=Escherichia coli, GI1787808, Length=380, Percent_Identity=30.2631578947368, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI145693198, Length=380, Percent_Identity=23.4210526315789, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTBD_BACSU (O34367)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   C69988
- RefSeq:   NP_390782.1
- ProteinModelPortal:   O34367
- EnsemblBacteria:   EBBACT00000000442
- GeneID:   936655
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU29040
- NMPDR:   fig|224308.1.peg.2907
- GenoList:   BSU29040
- GeneTree:   EBGT00070000031875
- HOGENOM:   HBG732715
- OMA:   TVAHYGL
- PhylomeDB:   O34367
- ProtClustDB:   CLSK2518258
- BioCyc:   BSUB:BSU29040-MONOMER
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196

Pfam domain/function: PF07690 MFS_1; SSF103473 MFS_gen_substrate_transporter

EC number: NA

Molecular weight: Translated: 41629; Mature: 41498

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x117c1250)-; HASH(0x1151b3c8)-; HASH(0x116a3ba0)-; HASH(0xfa758cc)-; HASH(0x11a2b67c)-; HASH(0x11a467e4)-; HASH(0xfd030c0)-; HASH(0xdcec918)-; HASH(0x117f16dc)-; HASH(0x11514438)-; HASH(0x11a3e0f4)-; HASH(0xd2e2cf4)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSANKSNIPALLALAVSAFAIGTTEFISVGLLPLIADDLDIPVTTAGLTVSLYALGVTF
CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHH
GAPILTSLTSSMSRKTLLLWIMFIFIAGNTMAATASSIGILLAARVISAFSHGVFMSIGS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TIAADIVPEDKRASAISIMFTGLTVATVTGVPFGTFIGQQFGWRFAFMVIIAVGIIAFIT
HHHHHCCCCCCCCCEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGILVPSKLRKGTKTTMRDQLKLVTNSRLLLLFVITALGYGGTFVVFTYLSPLLQEVTGF
CCCCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
KAGTVAVILLGYGIAIAIGNMIGGKLSNRNPIAALFYMFIVQAIVLFVLTFTAPYQAAGL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ITILCMGLLAFMNVPGLQVYVVMLAERFVPSAVDVASAMNIAAFNAGIALGSYLGGVITD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIGLIHTAWIGGLMVVGAVILTGWSRLMEKRDRQEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure 
TSANKSNIPALLALAVSAFAIGTTEFISVGLLPLIADDLDIPVTTAGLTVSLYALGVTF
CCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHH
GAPILTSLTSSMSRKTLLLWIMFIFIAGNTMAATASSIGILLAARVISAFSHGVFMSIGS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TIAADIVPEDKRASAISIMFTGLTVATVTGVPFGTFIGQQFGWRFAFMVIIAVGIIAFIT
HHHHHCCCCCCCCCEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGILVPSKLRKGTKTTMRDQLKLVTNSRLLLLFVITALGYGGTFVVFTYLSPLLQEVTGF
CCCCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
KAGTVAVILLGYGIAIAIGNMIGGKLSNRNPIAALFYMFIVQAIVLFVLTFTAPYQAAGL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ITILCMGLLAFMNVPGLQVYVVMLAERFVPSAVDVASAMNIAAFNAGIALGSYLGGVITD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIGLIHTAWIGGLMVVGAVILTGWSRLMEKRDRQEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377