Click here to switch to the map view.

The map label for this gene is ysdA

Identifier: 16079936

GI number: 16079936

Start: 2951898

End: 2952167

Strand: Reverse

Name: ysdA

Synonym: BSU28840

Alternate gene names: 16079936

Gene position: 2952167-2951898 (Counterclockwise)

Preceding gene: 16079937

Following gene: 16079934

Centisome position: 70.03

GC content: 44.81

Gene sequence:

>270_bases
ATGATTATTGCTGCTTATTTGGTGTTGATTAATCTGTGCGGTTTTTGGGTGATGGGCATTGACAAACGCAAAGCGCAGCA
GCACAAGTGGAGAATTTCTGAAGACCGGCTGTGGCTGATAGCCATCGTGTTTGGAGCGCTCGGTGTCTGGCTTGGCATGC
AAACCTTCAGACATAAAACGAAACACGCTTCTTTTAAGTACGGAGTACCGCTTCTTCTGGTAATAGAAGCGATTCTCATC
GCTATTTACTACAGCCCGTTTGATTTATAA

Upstream 100 bases:

>100_bases
TCAATCAGCTTGCTGATGCTGCTAAAGCTCAATTAAACAAGTAATCATATAGAGCCGCTCTCCAGCAGAGCGGCTTTTTC
TATATAAAGGATGAGGCAAC

Downstream 100 bases:

>100_bases
AAAGCAGAAAAGCGTTTAACGCTCTTCTGCTTTTTTTGCGAGTTTAATGGGCTGGTCCCAGTCAATCTTACAATTTGGAT
ATCGTTCCAGCACTTTTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MIIAAYLVLINLCGFWVMGIDKRKAQQHKWRISEDRLWLIAIVFGALGVWLGMQTFRHKTKHASFKYGVPLLLVIEAILI
AIYYSPFDL

Sequences:

>Translated_89_residues
MIIAAYLVLINLCGFWVMGIDKRKAQQHKWRISEDRLWLIAIVFGALGVWLGMQTFRHKTKHASFKYGVPLLLVIEAILI
AIYYSPFDL
>Mature_89_residues
MIIAAYLVLINLCGFWVMGIDKRKAQQHKWRISEDRLWLIAIVFGALGVWLGMQTFRHKTKHASFKYGVPLLLVIEAILI
AIYYSPFDL

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YSDA_BACSU (P94519)

Other databases:

- EMBL:   Z75208
- EMBL:   AL009126
- PIR:   G69983
- RefSeq:   NP_390762.1
- EnsemblBacteria:   EBBACT00000001183
- GeneID:   937419
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28840
- NMPDR:   fig|224308.1.peg.2887
- GenoList:   BSU28840
- GeneTree:   EBGT00050000001566
- HOGENOM:   HBG704459
- OMA:   FAIDKRK
- ProtClustDB:   CLSK887699
- BioCyc:   BSUB:BSU28840-MONOMER
- InterPro:   IPR010718

Pfam domain/function: PF06961 DUF1294

EC number: NA

Molecular weight: Translated: 10322; Mature: 10322

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1195fe50)-; HASH(0x106284b8)-; HASH(0x11765f84)-;

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIAAYLVLINLCGFWVMGIDKRKAQQHKWRISEDRLWLIAIVFGALGVWLGMQTFRHKT
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KHASFKYGVPLLLVIEAILIAIYYSPFDL
HCCCCCCCCHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure
MIIAAYLVLINLCGFWVMGIDKRKAQQHKWRISEDRLWLIAIVFGALGVWLGMQTFRHKT
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KHASFKYGVPLLLVIEAILIAIYYSPFDL
HCCCCCCCCHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377