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The map label for this gene is gerM

Identifier: 16079890

GI number: 16079890

Start: 2902002

End: 2903102

Strand: Reverse

Name: gerM

Synonym: BSU28380

Alternate gene names: 16079890

Gene position: 2903102-2902002 (Counterclockwise)

Preceding gene: 255767654

Following gene: 16079889

Centisome position: 68.87

GC content: 45.5

Gene sequence:

>1101_bases
ATGCTGAAAAAAGGACCTGCAGTCATTGGTGCCACTTGTCTCACCTCTGCCTTGCTTTTATCCGGATGCGGTTTGTTTCA
ATCTGATAAGGCAGCCGAGGAAATTGATCCGCCTCAAGACGTTACATTCGTGAACGATGAAGCGGGTGCCAATTCAAATA
CAACAGCAGCCAAAAAAACAGAAAGTGAAAAAAGCGATACCGCAAAAGCGGATCAAGCCTCATCTACTGTTATGAGGGAG
CTTTATCTCATTGATAAAAACGGGTATGTTGTTGCGCAAACGCTGCCTCTTCCTAAAAGTGAGAGCACGGCTAAGCAGGC
GCTTGAATACCTCGTACAGGGCGGGCCTGTGTCTGAAATTCTTCCGAATGGCTTCAGAGCTGTATTGCCGGCTGACACCA
CCGTTAACGTTGACATCAAAAAAGATGGAACGGCGATAGCTGATTTCTCTAATGAGTTCAAAAATTATAAGAAAGAAGAC
GAACAGAAAATCGTTCAATCTGTGACGTGGACGCTGACGCAATTTAGTTCGATAGATAAAGTGAAGCTGAGAATAAACGG
GCATGAACTGAAGGAGATGCCTGTAGGAGGGACGCCGATCTCAGATGATTTAAGCCGCAAAGACGGCATTAATTTGGAAA
CAGCCGGTGTAAATGATCTCACTGCTACCCATCCGCTGACAGTCTACTATTTGGCGGAAAATGAAGACAGTGAATACTAC
GTGCCGGTGACCAAACGAATCGACAATTCGGAAAAAGACGACATCACAGCAGCCATTAATGAATTGGCTAAAGGGCCGAG
CAAGGTGAGCGGGCTGTTAACAGACTTCAGTGAAGATGTAAAGCTGGTCAGCAAACCGAAAATCAAAGACGGGCGCGTGA
CGTTGGATTTCAATCAATCTATATTCGGCAGCGCCGATGAGAAGACGAAAATGATTTCTTCAGAAGTGCTGAACAGCATT
GTGCTGACGTTAACGGAGCAGCCGGATGTAAAAAGCGTCTCTGTTAAAGTGAACGGAAAATCAGAGCTGGTAAATGAAAA
AGGCGAAAAGCTCACAGAACCGGTCTCCAGACCATCTCAAGTGAATACGGGTAGTTTTTAA

Upstream 100 bases:

>100_bases
GTATGTTGCGGGTTTTTTTCTGTTTTGCCGGAATTCTTCGGTCTATTTCCTAAAGAGGCTCGTATACATAATAGTACAAA
CATCCTTAGGAGGGAAAAGT

Downstream 100 bases:

>100_bases
ATTGGGATTTTTGATATACTAGGAAGAAAGAGGTTAGCGTTCCGGCTGCCTCTTTCTTTATTCAATTCCGGGACAAAAAT
GGTTTATGTACATACAATCG

Product: germination and sporulation lytic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MLKKGPAVIGATCLTSALLLSGCGLFQSDKAAEEIDPPQDVTFVNDEAGANSNTTAAKKTESEKSDTAKADQASSTVMRE
LYLIDKNGYVVAQTLPLPKSESTAKQALEYLVQGGPVSEILPNGFRAVLPADTTVNVDIKKDGTAIADFSNEFKNYKKED
EQKIVQSVTWTLTQFSSIDKVKLRINGHELKEMPVGGTPISDDLSRKDGINLETAGVNDLTATHPLTVYYLAENEDSEYY
VPVTKRIDNSEKDDITAAINELAKGPSKVSGLLTDFSEDVKLVSKPKIKDGRVTLDFNQSIFGSADEKTKMISSEVLNSI
VLTLTEQPDVKSVSVKVNGKSELVNEKGEKLTEPVSRPSQVNTGSF

Sequences:

>Translated_366_residues
MLKKGPAVIGATCLTSALLLSGCGLFQSDKAAEEIDPPQDVTFVNDEAGANSNTTAAKKTESEKSDTAKADQASSTVMRE
LYLIDKNGYVVAQTLPLPKSESTAKQALEYLVQGGPVSEILPNGFRAVLPADTTVNVDIKKDGTAIADFSNEFKNYKKED
EQKIVQSVTWTLTQFSSIDKVKLRINGHELKEMPVGGTPISDDLSRKDGINLETAGVNDLTATHPLTVYYLAENEDSEYY
VPVTKRIDNSEKDDITAAINELAKGPSKVSGLLTDFSEDVKLVSKPKIKDGRVTLDFNQSIFGSADEKTKMISSEVLNSI
VLTLTEQPDVKSVSVKVNGKSELVNEKGEKLTEPVSRPSQVNTGSF
>Mature_366_residues
MLKKGPAVIGATCLTSALLLSGCGLFQSDKAAEEIDPPQDVTFVNDEAGANSNTTAAKKTESEKSDTAKADQASSTVMRE
LYLIDKNGYVVAQTLPLPKSESTAKQALEYLVQGGPVSEILPNGFRAVLPADTTVNVDIKKDGTAIADFSNEFKNYKKED
EQKIVQSVTWTLTQFSSIDKVKLRINGHELKEMPVGGTPISDDLSRKDGINLETAGVNDLTATHPLTVYYLAENEDSEYY
VPVTKRIDNSEKDDITAAINELAKGPSKVSGLLTDFSEDVKLVSKPKIKDGRVTLDFNQSIFGSADEKTKMISSEVLNSI
VLTLTEQPDVKSVSVKVNGKSELVNEKGEKLTEPVSRPSQVNTGSF

Specific function: Unknown. Affects both sporulation and germination

COG id: COG5401

COG function: function code R; Spore germination protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GERM_BACSU (P39072)

Other databases:

- EMBL:   Z75208
- EMBL:   AL009126
- EMBL:   M65162
- PIR:   C69631
- RefSeq:   NP_390716.1
- ProteinModelPortal:   P39072
- EnsemblBacteria:   EBBACT00000000334
- GeneID:   936490
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28380
- NMPDR:   fig|224308.1.peg.2841
- GenoList:   BSU28380
- GeneTree:   EBGT00050000002865
- HOGENOM:   HBG314047
- OMA:   TWTLTQF
- ProtClustDB:   CLSK873494
- BioCyc:   BSUB:BSU28380-MONOMER
- InterPro:   IPR019606
- SMART:   SM00909

Pfam domain/function: PF10646 Germane

EC number: NA

Molecular weight: Translated: 39573; Mature: 39573

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKGPAVIGATCLTSALLLSGCGLFQSDKAAEEIDPPQDVTFVNDEAGANSNTTAAKKT
CCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCHHHHC
ESEKSDTAKADQASSTVMRELYLIDKNGYVVAQTLPLPKSESTAKQALEYLVQGGPVSEI
CCHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH
LPNGFRAVLPADTTVNVDIKKDGTAIADFSNEFKNYKKEDEQKIVQSVTWTLTQFSSIDK
CCCCCEEEECCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VKLRINGHELKEMPVGGTPISDDLSRKDGINLETAGVNDLTATHPLTVYYLAENEDSEYY
EEEEECCCCHHCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCEEEEEEEECCCCCEE
VPVTKRIDNSEKDDITAAINELAKGPSKVSGLLTDFSEDVKLVSKPKIKDGRVTLDFNQS
EEEHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
IFGSADEKTKMISSEVLNSIVLTLTEQPDVKSVSVKVNGKSELVNEKGEKLTEPVSRPSQ
CCCCCHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCC
VNTGSF
CCCCCC
>Mature Secondary Structure
MLKKGPAVIGATCLTSALLLSGCGLFQSDKAAEEIDPPQDVTFVNDEAGANSNTTAAKKT
CCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCHHHHC
ESEKSDTAKADQASSTVMRELYLIDKNGYVVAQTLPLPKSESTAKQALEYLVQGGPVSEI
CCHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH
LPNGFRAVLPADTTVNVDIKKDGTAIADFSNEFKNYKKEDEQKIVQSVTWTLTQFSSIDK
CCCCCEEEECCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VKLRINGHELKEMPVGGTPISDDLSRKDGINLETAGVNDLTATHPLTVYYLAENEDSEYY
EEEEECCCCHHCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCEEEEEEEECCCCCEE
VPVTKRIDNSEKDDITAAINELAKGPSKVSGLLTDFSEDVKLVSKPKIKDGRVTLDFNQS
EEEHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
IFGSADEKTKMISSEVLNSIVLTLTEQPDVKSVSVKVNGKSELVNEKGEKLTEPVSRPSQ
CCCCCHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCC
VNTGSF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377; 2846748