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The map label for this gene is radC

Identifier: 16079856

GI number: 16079856

Start: 2861840

End: 2862535

Strand: Reverse

Name: radC

Synonym: BSU28040

Alternate gene names: 16079856

Gene position: 2862535-2861840 (Counterclockwise)

Preceding gene: 16079857

Following gene: 255767642

Centisome position: 67.9

GC content: 44.54

Gene sequence:

>696_bases
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Upstream 100 bases:

>100_bases
AGTCATGGGCCTTCCTATATCAAAAACAATGAGAGCTCTTCGCCATTTTGATATAAGGGCATGACGGTTCTATAAACGGG
AAGGGAAAGAAAAGGAGTGC

Downstream 100 bases:

>100_bases
CACTTTTTTTTTCGTCGAATTAAGCTATAATAGAGTTTATGAGTTTTTCCCTTTAGGGTATTTTTGCTTTAAGAAAGGAA
GATACATACATATGTTTGGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Sequences:

>Translated_231_residues
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL
>Mature_231_residues
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=36.6197183098592, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI1788997, Length=108, Percent_Identity=47.2222222222222, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788312, Length=109, Percent_Identity=44.0366972477064, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI2367100, Length=108, Percent_Identity=44.4444444444444, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YSXA_BACSU (Q02170)

Other databases:

- EMBL:   M96343
- EMBL:   L08793
- EMBL:   AL009126
- PIR:   B45239
- RefSeq:   NP_390682.1
- ProteinModelPortal:   Q02170
- SMR:   Q02170
- EnsemblBacteria:   EBBACT00000003802
- GeneID:   936544
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28040
- NMPDR:   fig|224308.1.peg.2807
- GenoList:   BSU28040
- GeneTree:   EBGT00050000002627
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- PhylomeDB:   Q02170
- ProtClustDB:   PRK00024
- BioCyc:   BSUB:BSU28040-MONOMER
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; PF00633 HHH; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 26147; Mature: 26147

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
FDGLRLLKEASVEELSSIPGIGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
MEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKEAFKRSAASFICVH
HHHHHHHHHCCEEEEEECCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEE
NHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEEHHCCCCC
>Mature Secondary Structure
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
FDGLRLLKEASVEELSSIPGIGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
MEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKEAFKRSAASFICVH
HHHHHHHHHCCEEEEEECCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEE
NHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1400224; 8387996; 9384377; 1400225