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The map label for this gene is yrvJ

Identifier: 16079812

GI number: 16079812

Start: 2818494

End: 2820050

Strand: Direct

Name: yrvJ

Synonym: BSU27580

Alternate gene names: 16079812

Gene position: 2818494-2820050 (Clockwise)

Preceding gene: 16079807

Following gene: 16079820

Centisome position: 66.86

GC content: 48.23

Gene sequence:

>1557_bases
ATGAACAAGAAATACTTTGTCCTTATTGTATGTATTATTTTCACCTCAGCGCTATTCCCGACCTTTTCATCCGTTACAGC
TGCTCAAGGAGAAGCGGTCATCGCAACAGATGAAATGAACGTCAGAAGCGGCCCAGGGCTTAGCTACGGCATTACAGCGG
AAGTAAAAAAGGGAGAACGCTATCCAATTTTAAAGGAAGATGGAGACTGGGTGCAGATACAGCTTGGTTCTGGAGAAAAG
GGCTGGGTAGTCTCCTGGCTTATTACAAAGGAAGACCAGGCCAGCACAAGCTCCTCAGGAAGCAGTGACACTGTGACATC
AACAGACCCCGATCTGCGGATGAGAAGCGGCCCGGGCACTTCCTACGAAGTCATCGGCAAATTCCCGCAAGGCAGCCAAG
CATCTGTCATTGATAAAGATTCGGGCTGGATCAAGATATCCTATCACAGTGCCACCGGATGGGTATCATCTGAATATGTC
ACATCAGGAGGCAGCAGTTCAGCGTCTGATGAGAGTGACCAAACCGAGGATTCCGGTGCGTCAACGACGGGCACAGTCGG
TGTTTCTTCGCTAAATGTAAGAGCCTCCGCCTCACATGACGCGGCAATTATAACAAAACTTGATCGCGGAACGAAACTGA
CGGTTCTCAACGAGAAAAATGGCTGGGCTCACATTGAGGTGAACGGGCTAAAAGGCTGGGTTGCAAGCCATTACCTTTTG
ACTAGTTCTGTTCCAGCTGATGATTCAGCAAATGCCGGCAGTTCATCCTCCGCTAAAAAAGCCTATATCATGTACGGAGG
AACGAATCTAAGAAGTGATGCGTCAACATCAGCTTCGATCGTTGAGCGCGCTGCCAAAGGAGATTCATACACCATTACCG
GTTCAAAGGGAAGCTGGTATGAAATAAAGCTTGATAACGGGCAGACTGCTTATGTAGCCAATTGGGTGGTCCAAACGTCT
AAAAGCGCAGAAGAAGCAGGTGAACCGCCAGTCTCTGATTCCCCGTCTGGAAACGGCTCTCTAAACAATAAAACGATTAT
TGTTGACCCGGGACATGGAGGAAAAGACAGCGGAACGATCGGGTATTCGGGGAAATTCGAGAAAAACCTGACGATCAAAA
CGGCAAAACTGCTCGCCAGCAAACTTAGATCGGCTGGAGCGGATGTATATGTGACACGCCAGGATGATACCTTTGTCAGC
CTGCAGTCACGGGTCTCTACCTCTCACTACCGTAACGCTGACGCCTTTATCAGCATTCATTATGACAGCTATGCGGATAC
CTCTACAAGAGGCAGTACAGCATATTACTACAGTCCTGCCAAAGATCAGGAACTCGCATCAGATGTCCACTCAGAAGTGG
TGAAGCGTTCTTCCATTCCAGACCGCGGCGTATTATTCGGAGATTATTATGTGCTCCGGGAAAACAGACAGCCCGCTATG
CTGTACGAGCTGGGATATGTAAGCCATCCGCAGGAAGAAGCCATTGTACATAGCAATTCATACCAAGAAAAAGTAACAGA
TGGGATCGAAAGCGGATTAGAGAAATACTTCCAATAA

Upstream 100 bases:

>100_bases
TAGTATAAACAAATCATTTTATTTTTATTTAAAAATCAGAAAGGACTTTACGATATTAAACAAGAATGCTTTTTTAATGA
TCATCAGAAAGGAGGACACA

Downstream 100 bases:

>100_bases
AAAAAGCTGCCTTTTGGCAGCTTTTTTTATTTTGAATCCATAATGAGCGTGACCGGTCCGGAGTTTGTAAGCTGAACATC
CATCATTGCTCCAAACGTTC

Product: N-acetylmuramoyl-L-alanine amidase, family 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MNKKYFVLIVCIIFTSALFPTFSSVTAAQGEAVIATDEMNVRSGPGLSYGITAEVKKGERYPILKEDGDWVQIQLGSGEK
GWVVSWLITKEDQASTSSSGSSDTVTSTDPDLRMRSGPGTSYEVIGKFPQGSQASVIDKDSGWIKISYHSATGWVSSEYV
TSGGSSSASDESDQTEDSGASTTGTVGVSSLNVRASASHDAAIITKLDRGTKLTVLNEKNGWAHIEVNGLKGWVASHYLL
TSSVPADDSANAGSSSSAKKAYIMYGGTNLRSDASTSASIVERAAKGDSYTITGSKGSWYEIKLDNGQTAYVANWVVQTS
KSAEEAGEPPVSDSPSGNGSLNNKTIIVDPGHGGKDSGTIGYSGKFEKNLTIKTAKLLASKLRSAGADVYVTRQDDTFVS
LQSRVSTSHYRNADAFISIHYDSYADTSTRGSTAYYYSPAKDQELASDVHSEVVKRSSIPDRGVLFGDYYVLRENRQPAM
LYELGYVSHPQEEAIVHSNSYQEKVTDGIESGLEKYFQ

Sequences:

>Translated_518_residues
MNKKYFVLIVCIIFTSALFPTFSSVTAAQGEAVIATDEMNVRSGPGLSYGITAEVKKGERYPILKEDGDWVQIQLGSGEK
GWVVSWLITKEDQASTSSSGSSDTVTSTDPDLRMRSGPGTSYEVIGKFPQGSQASVIDKDSGWIKISYHSATGWVSSEYV
TSGGSSSASDESDQTEDSGASTTGTVGVSSLNVRASASHDAAIITKLDRGTKLTVLNEKNGWAHIEVNGLKGWVASHYLL
TSSVPADDSANAGSSSSAKKAYIMYGGTNLRSDASTSASIVERAAKGDSYTITGSKGSWYEIKLDNGQTAYVANWVVQTS
KSAEEAGEPPVSDSPSGNGSLNNKTIIVDPGHGGKDSGTIGYSGKFEKNLTIKTAKLLASKLRSAGADVYVTRQDDTFVS
LQSRVSTSHYRNADAFISIHYDSYADTSTRGSTAYYYSPAKDQELASDVHSEVVKRSSIPDRGVLFGDYYVLRENRQPAM
LYELGYVSHPQEEAIVHSNSYQEKVTDGIESGLEKYFQ
>Mature_518_residues
MNKKYFVLIVCIIFTSALFPTFSSVTAAQGEAVIATDEMNVRSGPGLSYGITAEVKKGERYPILKEDGDWVQIQLGSGEK
GWVVSWLITKEDQASTSSSGSSDTVTSTDPDLRMRSGPGTSYEVIGKFPQGSQASVIDKDSGWIKISYHSATGWVSSEYV
TSGGSSSASDESDQTEDSGASTTGTVGVSSLNVRASASHDAAIITKLDRGTKLTVLNEKNGWAHIEVNGLKGWVASHYLL
TSSVPADDSANAGSSSSAKKAYIMYGGTNLRSDASTSASIVERAAKGDSYTITGSKGSWYEIKLDNGQTAYVANWVVQTS
KSAEEAGEPPVSDSPSGNGSLNNKTIIVDPGHGGKDSGTIGYSGKFEKNLTIKTAKLLASKLRSAGADVYVTRQDDTFVS
LQSRVSTSHYRNADAFISIHYDSYADTSTRGSTAYYYSPAKDQELASDVHSEVVKRSSIPDRGVLFGDYYVLRENRQPAM
LYELGYVSHPQEEAIVHSNSYQEKVTDGIESGLEKYFQ

Specific function: Probably involved in cell-wall metabolism

COG id: COG3103

COG function: function code T; SH3 domain protein

Gene ontology:

Cell location: Secreted, cell wall

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family

Homologues:

Organism=Escherichia coli, GI1788776, Length=230, Percent_Identity=27.3913043478261, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082163, Length=243, Percent_Identity=27.1604938271605, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1790611, Length=241, Percent_Identity=28.2157676348548, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRVJ_BACSU (O32041)

Other databases:

- EMBL:   AL009126
- PIR:   B69981
- RefSeq:   NP_390636.1
- HSSP:   P16333
- ProteinModelPortal:   O32041
- EnsemblBacteria:   EBBACT00000001868
- GeneID:   937544
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU27580
- NMPDR:   fig|224308.1.peg.2761
- GenoList:   BSU27580
- GeneTree:   EBGT00070000031903
- HOGENOM:   HBG399519
- OMA:   AFISIHY
- PhylomeDB:   O32041
- ProtClustDB:   CLSK887673
- BioCyc:   BSUB:BSU27580-MONOMER
- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247
- Gene3D:   G3DSA:3.40.630.40
- PIRSF:   PIRSF037846
- SMART:   SM00646
- SMART:   SM00287

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3

EC number: =3.5.1.28

Molecular weight: Translated: 55501; Mature: 55501

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKYFVLIVCIIFTSALFPTFSSVTAAQGEAVIATDEMNVRSGPGLSYGITAEVKKGER
CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCC
YPILKEDGDWVQIQLGSGEKGWVVSWLITKEDQASTSSSGSSDTVTSTDPDLRMRSGPGT
CCEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCEEECCCCC
SYEVIGKFPQGSQASVIDKDSGWIKISYHSATGWVSSEYVTSGGSSSASDESDQTEDSGA
CEEEEECCCCCCCCEEEECCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
STTGTVGVSSLNVRASASHDAAIITKLDRGTKLTVLNEKNGWAHIEVNGLKGWVASHYLL
CCCCEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCHHHEEEE
TSSVPADDSANAGSSSSAKKAYIMYGGTNLRSDASTSASIVERAAKGDSYTITGSKGSWY
ECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEE
EIKLDNGQTAYVANWVVQTSKSAEEAGEPPVSDSPSGNGSLNNKTIIVDPGHGGKDSGTI
EEEECCCCEEEEEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEE
GYSGKFEKNLTIKTAKLLASKLRSAGADVYVTRQDDTFVSLQSRVSTSHYRNADAFISIH
CCCCCCCCCEEEHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHCCCCCEEEEEE
YDSYADTSTRGSTAYYYSPAKDQELASDVHSEVVKRSSIPDRGVLFGDYYVLRENRQPAM
ECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEE
LYELGYVSHPQEEAIVHSNSYQEKVTDGIESGLEKYFQ
EEEECCCCCCCHHEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKKYFVLIVCIIFTSALFPTFSSVTAAQGEAVIATDEMNVRSGPGLSYGITAEVKKGER
CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCC
YPILKEDGDWVQIQLGSGEKGWVVSWLITKEDQASTSSSGSSDTVTSTDPDLRMRSGPGT
CCEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCEEECCCCC
SYEVIGKFPQGSQASVIDKDSGWIKISYHSATGWVSSEYVTSGGSSSASDESDQTEDSGA
CEEEEECCCCCCCCEEEECCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
STTGTVGVSSLNVRASASHDAAIITKLDRGTKLTVLNEKNGWAHIEVNGLKGWVASHYLL
CCCCEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCHHHEEEE
TSSVPADDSANAGSSSSAKKAYIMYGGTNLRSDASTSASIVERAAKGDSYTITGSKGSWY
ECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEE
EIKLDNGQTAYVANWVVQTSKSAEEAGEPPVSDSPSGNGSLNNKTIIVDPGHGGKDSGTI
EEEECCCCEEEEEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEE
GYSGKFEKNLTIKTAKLLASKLRSAGADVYVTRQDDTFVSLQSRVSTSHYRNADAFISIH
CCCCCCCCCEEEHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHCCCCCEEEEEE
YDSYADTSTRGSTAYYYSPAKDQELASDVHSEVVKRSSIPDRGVLFGDYYVLRENRQPAM
ECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEE
LYELGYVSHPQEEAIVHSNSYQEKVTDGIESGLEKYFQ
EEEECCCCCCCHHEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377