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The map label for this gene is yrvN

Identifier: 16079807

GI number: 16079807

Start: 2812336

End: 2813601

Strand: Direct

Name: yrvN

Synonym: BSU27530

Alternate gene names: 16079807

Gene position: 2812336-2813601 (Clockwise)

Preceding gene: 16079799

Following gene: 16079812

Centisome position: 66.71

GC content: 45.97

Gene sequence:

>1266_bases
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGAATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGAACTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCAATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAGGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGGGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAA

Upstream 100 bases:

>100_bases
CCTTCAGCGAATTTTCATTGAGGCAGAAGGAAAGGGGCCTTTACCCTTTTCTAATGTACGGTTTTCCGTTACCCTGTAAT
TAAGTAAGGAGAGATGATAG

Downstream 100 bases:

>100_bases
AACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGTTTGATTTCAATGTCTTTCAA
AAGATCCATGACAACATGTC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Sequences:

>Translated_421_residues
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK
>Mature_421_residues
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=35.972850678733, Blast_Score=248, Evalue=1e-65,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=32.8054298642534, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI6677723, Length=314, Percent_Identity=26.1146496815287, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI194306571, Length=310, Percent_Identity=26.1290322580645, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI194306567, Length=310, Percent_Identity=26.1290322580645, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1787119, Length=410, Percent_Identity=38.780487804878, Blast_Score=279, Evalue=3e-76,
Organism=Saccharomyces cerevisiae, GI6324111, Length=420, Percent_Identity=34.5238095238095, Blast_Score=230, Evalue=3e-61,
Organism=Saccharomyces cerevisiae, GI6324039, Length=264, Percent_Identity=25.3787878787879, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRVN_BACSU (O34528)

Other databases:

- EMBL:   AL009126
- PIR:   D69981
- RefSeq:   NP_390631.1
- ProteinModelPortal:   O34528
- SMR:   O34528
- EnsemblBacteria:   EBBACT00000003586
- GeneID:   937545
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU27530
- NMPDR:   fig|224308.1.peg.2756
- GenoList:   BSU27530
- GeneTree:   EBGT00050000000362
- HOGENOM:   HBG635390
- OMA:   NKQYYKP
- ProtClustDB:   PRK13342
- BioCyc:   BSUB:BSU27530-MONOMER
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- SMART:   SM00382

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N

EC number: NA

Molecular weight: Translated: 46515; Mature: 46515

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAG
CCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHCC
STSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMII
CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCEECHHHCCCEEE
LIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALERALHDEHRGLGTYSVSIDDQA
EEEECCCCCCHHCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
MEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
HHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCHHH
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNA
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCCCHHHHHH
IQTAERVGFPEARIPLANAVIELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHY
HHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHC
KGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKPKQTGKFESALKQVYDKLMKR
CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
K
C
>Mature Secondary Structure
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAG
CCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHCC
STSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMII
CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCEECHHHCCCEEE
LIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALERALHDEHRGLGTYSVSIDDQA
EEEECCCCCCHHCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
MEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
HHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCHHH
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNA
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCCCHHHHHH
IQTAERVGFPEARIPLANAVIELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHY
HHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHC
KGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKPKQTGKFESALKQVYDKLMKR
CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377