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The map label for this gene is yrrB

Identifier: 16079802

GI number: 16079802

Start: 2808707

End: 2809327

Strand: Reverse

Name: yrrB

Synonym: BSU27490

Alternate gene names: 16079802

Gene position: 2809327-2808707 (Counterclockwise)

Preceding gene: 255767628

Following gene: 16079801

Centisome position: 66.64

GC content: 45.09

Gene sequence:

>621_bases
ATGCAGGAAGGCGATTACGAGAAAGCGGCAGAGGCATTTACAAAAGCGATTGAAGAAAATAAAGAAGACGCGATTCCGTA
TATCAATTTTGCCAACCTTCTTTCATCCGTAAACGAGCTGGAACGTGCGCTTGCGTTTTATGATAAAGCGCTTGAATTAG
ACAGTAGCGCAGCCACTGCTTATTATGGAGCAGGAAATGTCTATGTTGTAAAAGAAATGTACAAAGAAGCGAAAGACATG
TTTGAAAAAGCGCTACGTGCGGGGATGGAAAACGGCGACCTGTTTTACATGCTCGGAACGGTACTTGTCAAGCTCGAACA
GCCTAAGCTTGCACTGCCATATTTACAAAGAGCAGTCGAACTGAATGAAAACGATACGGAAGCGCGTTTTCAATTCGGGA
TGTGCTTAGCCAACGAGGGCATGCTGGACGAAGCGCTCAGCCAATTCGCAGCTGTGACAGAGCAAGACCCGGGGCATGCA
GATGCATTTTATAATGCCGGTGTCACTTATGCTTATAAAGAAAACCGAGAAAAAGCGCTGGAAATGCTGGACAAGGCAAT
CGATATCCAGCCAGATCATATGCTTGCGCTTCATGCTAAAAAACTGATTGATCCATCATAA

Upstream 100 bases:

>100_bases
TTGTGGTACGTATAAAAGATGAAAAACCTCAACACTGAGTTGGGGTTTTTTAATGAAAGGAAGATGATCGGTGGATTATA
ATCAACTCGGTATAGAGGCG

Downstream 100 bases:

>100_bases
CAGGCACAGGAGGAGGGACAGCTCGTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGAC
AGTCAACACAGTCATCTATC

Product: tetratricopeptide repeat family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MQEGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDM
FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA
DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLIDPS

Sequences:

>Translated_206_residues
MQEGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDM
FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA
DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLIDPS
>Mature_206_residues
MQEGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDM
FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA
DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLIDPS

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats

Homologues:

Organism=Homo sapiens, GI224809432, Length=175, Percent_Identity=29.1428571428571, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319387, Length=189, Percent_Identity=29.1005291005291, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24659892, Length=189, Percent_Identity=24.3386243386243, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24656717, Length=170, Percent_Identity=25.2941176470588, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI18110006, Length=170, Percent_Identity=25.2941176470588, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRRB_BACSU (O34452)

Other databases:

- EMBL:   AL009126
- PIR:   H69978
- RefSeq:   NP_390626.1
- PDB:   2Q7F
- PDBsum:   2Q7F
- ProteinModelPortal:   O34452
- SMR:   O34452
- EnsemblBacteria:   EBBACT00000000418
- GeneID:   938093
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU27490
- NMPDR:   fig|224308.1.peg.2751
- GenoList:   BSU27490
- GeneTree:   EBGT00050000001347
- HOGENOM:   HBG314112
- OMA:   LLEETHT
- ProtClustDB:   CLSK872977
- BioCyc:   BSUB:BSU27490-MONOMER
- GO:   GO:0005488
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10
- SMART:   SM00028

Pfam domain/function: PF00515 TPR_1

EC number: NA

Molecular weight: Translated: 23092; Mature: 23092

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA
CCCCCHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE
EECCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEHHHHHHHHH
EMLDKAIDIQPDHMLALHAKKLIDPS
HHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MQEGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA
CCCCCHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE
EECCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEHHHHHHHHH
EMLDKAIDIQPDHMLALHAKKLIDPS
HHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377