Click here to switch to the map view.

The map label for this gene is yrhD

Identifier: 16079777

GI number: 16079777

Start: 2784170

End: 2784652

Strand: Direct

Name: yrhD

Synonym: BSU27230

Alternate gene names: 16079777

Gene position: 2784170-2784652 (Clockwise)

Preceding gene: 16079776

Following gene: 16079783

Centisome position: 66.04

GC content: 44.93

Gene sequence:

>483_bases
ATGGCCACTCCGATTACGACGATCAAAAAAGAAACAAAAACAGCTGAGCAAATTAAGCTTGAAAAAATAGAAGAACTGAA
AGAGCTGCTGGCGGAAAATGAGGACGCCGTCTCTAAAACGATGACGTTAATGAATGAACTCAATGATCTTGGAATTTTTG
ATGCGGCAACAAGCATGCTCAGAGCGAAGGAAGACATTGCCAAGATTGCGCTTGGCCAAGTTTCCCGCGAGCCTGTCACC
AACCTCATCAACACGATGATGGCCGCCGGAGGCGCATTGACAAAAGCCGATCCTGAGTTTACAGCAAAGCTTTTAGAAAG
CGTAATGGCTGGGACTGAACAGGCACAAAGCTTTTTAAAAGAAGACAAGAAAGTCGGGATTCTCGACCTGTTAAAAGCAA
TGAACGATCCTGACATCAACAGAGCCGTCGGGTTCGGCCTTCAGTTTTTAAAAGGCATGGGAAAAGAACTTCGAGAACAA
TAA

Upstream 100 bases:

>100_bases
CAACAAAAAACGGCATCCGCAAAACGGAGTCGAAGCAGAAAGAAAATGGAACCGCCCTGGCTATGTACATCTGACTGATT
AAACGATAGGAGGAAAACGA

Downstream 100 bases:

>100_bases
CAGAAAAACAGCCATCTCTGATGATGGCTGTTTTTTTATTCGTCGGCTTCTTCCAGACGCTTCTTGTAAATAAGTGAACG
GTCAGCGCAAAAGAAGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MATPITTIKKETKTAEQIKLEKIEELKELLAENEDAVSKTMTLMNELNDLGIFDAATSMLRAKEDIAKIALGQVSREPVT
NLINTMMAAGGALTKADPEFTAKLLESVMAGTEQAQSFLKEDKKVGILDLLKAMNDPDINRAVGFGLQFLKGMGKELREQ

Sequences:

>Translated_160_residues
MATPITTIKKETKTAEQIKLEKIEELKELLAENEDAVSKTMTLMNELNDLGIFDAATSMLRAKEDIAKIALGQVSREPVT
NLINTMMAAGGALTKADPEFTAKLLESVMAGTEQAQSFLKEDKKVGILDLLKAMNDPDINRAVGFGLQFLKGMGKELREQ
>Mature_159_residues
ATPITTIKKETKTAEQIKLEKIEELKELLAENEDAVSKTMTLMNELNDLGIFDAATSMLRAKEDIAKIALGQVSREPVTN
LINTMMAAGGALTKADPEFTAKLLESVMAGTEQAQSFLKEDKKVGILDLLKAMNDPDINRAVGFGLQFLKGMGKELREQ

Specific function: Unknown

COG id: COG2427

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.fulgidus AF1717

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRHD_BACSU (O05396)

Other databases:

- EMBL:   U93874
- EMBL:   AL009126
- PIR:   C69974
- RefSeq:   NP_390601.1
- ProteinModelPortal:   O05396
- EnsemblBacteria:   EBBACT00000004027
- GeneID:   937583
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU27230
- NMPDR:   fig|224308.1.peg.2726
- GenoList:   BSU27230
- GeneTree:   EBGT00050000001698
- HOGENOM:   HBG337872
- OMA:   PISTIRD
- ProtClustDB:   CLSK887657
- BioCyc:   BSUB:BSU27230-MONOMER
- InterPro:   IPR012440

Pfam domain/function: PF07849 DUF1641

EC number: NA

Molecular weight: Translated: 17515; Mature: 17383

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPITTIKKETKTAEQIKLEKIEELKELLAENEDAVSKTMTLMNELNDLGIFDAATSML
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAKEDIAKIALGQVSREPVTNLINTMMAAGGALTKADPEFTAKLLESVMAGTEQAQSFLK
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHH
EDKKVGILDLLKAMNDPDINRAVGFGLQFLKGMGKELREQ
HHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATPITTIKKETKTAEQIKLEKIEELKELLAENEDAVSKTMTLMNELNDLGIFDAATSML
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAKEDIAKIALGQVSREPVTNLINTMMAAGGALTKADPEFTAKLLESVMAGTEQAQSFLK
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHH
EDKKVGILDLLKAMNDPDINRAVGFGLQFLKGMGKELREQ
HHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377