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The map label for this gene is yrpE

Identifier: 16079736

GI number: 16079736

Start: 2741357

End: 2742112

Strand: Reverse

Name: yrpE

Synonym: BSU26830

Alternate gene names: 16079736

Gene position: 2742112-2741357 (Counterclockwise)

Preceding gene: 16079737

Following gene: 16079732

Centisome position: 65.05

GC content: 38.49

Gene sequence:

>756_bases
ATGAACATTTTATTTTCAAAACGGCTAGGCATATTAACGATTGGTTCATTACTAGTTTTGGCAGGATGTCAGACTTCCGG
TTCTTCTGCAGGTGAGTCTAATCAAACAACATCATCCTCAGCAGTTGAAGAAGACTCTTCCAAAACGCAAGAGCAAACAT
CTGACAGTCATACACACGAACATTCTCACGATCATAGTCATGCGCATGATGAAGAAACAGAAAAAATATATGAAGGCTAT
TTTAAAAACAGCCAAGTAAAGGATCGCTTACTTTCTGATTGGGAAGGAGATTGGCAATCTGTATATCCATACCTGCAAGA
TGGTACTCTTGACGAAGTGTTTTCATATAAATCAGAACACGAAGGCGGCAAGACAGCTGAAGAATATAAAGAGTATTATA
AAAAAGGCTATCAAACAGATGTTGACCGTATTGTAATCCAGAAAGATACTGTAACGTTCTTCAAAAATGGAAAAGAATAT
TCTGGTAAGTATACGTATGACGGATACGAAATTCTAACCTATGATGCGGGCAATAGAGGGGTAAGATACATATTCAAACT
AGCTAAAAAAGCAGAAGGGCTGCCTCAGTATATTCAGTTTAGTGATCATAGTATTTACCCGACTAAAGCTAGTCATTACC
ATCTCTATTGGGGGGACGACCGTGAAGCTTTACTTGATGAAGTCAAAAACTGGCCTACTTACTACCCGTCAAAAATGGAT
GGACACGATATTGCCCATGAGATGATGGCTCATTAA

Upstream 100 bases:

>100_bases
TAGGCCATCCGCATGAAGAGCATTTTTCCTTTGATGTTTGCAAGAGATGTATGTATAATAAATCGTAATGTTTTCGATTT
AATAAAAAAGGAGTGTTGGA

Downstream 100 bases:

>100_bases
ATGATGATTACTCTATGAAAGTTGTTCTGCCATAGCCATTTTTTCTGTGGAGAATTGATAGAATGGGGAAAAAACTGATT
GAGACCATTCAGTATCCGCC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MNILFSKRLGILTIGSLLVLAGCQTSGSSAGESNQTTSSSAVEEDSSKTQEQTSDSHTHEHSHDHSHAHDEETEKIYEGY
FKNSQVKDRLLSDWEGDWQSVYPYLQDGTLDEVFSYKSEHEGGKTAEEYKEYYKKGYQTDVDRIVIQKDTVTFFKNGKEY
SGKYTYDGYEILTYDAGNRGVRYIFKLAKKAEGLPQYIQFSDHSIYPTKASHYHLYWGDDREALLDEVKNWPTYYPSKMD
GHDIAHEMMAH

Sequences:

>Translated_251_residues
MNILFSKRLGILTIGSLLVLAGCQTSGSSAGESNQTTSSSAVEEDSSKTQEQTSDSHTHEHSHDHSHAHDEETEKIYEGY
FKNSQVKDRLLSDWEGDWQSVYPYLQDGTLDEVFSYKSEHEGGKTAEEYKEYYKKGYQTDVDRIVIQKDTVTFFKNGKEY
SGKYTYDGYEILTYDAGNRGVRYIFKLAKKAEGLPQYIQFSDHSIYPTKASHYHLYWGDDREALLDEVKNWPTYYPSKMD
GHDIAHEMMAH
>Mature_251_residues
MNILFSKRLGILTIGSLLVLAGCQTSGSSAGESNQTTSSSAVEEDSSKTQEQTSDSHTHEHSHDHSHAHDEETEKIYEGY
FKNSQVKDRLLSDWEGDWQSVYPYLQDGTLDEVFSYKSEHEGGKTAEEYKEYYKKGYQTDVDRIVIQKDTVTFFKNGKEY
SGKYTYDGYEILTYDAGNRGVRYIFKLAKKAEGLPQYIQFSDHSIYPTKASHYHLYWGDDREALLDEVKNWPTYYPSKMD
GHDIAHEMMAH

Specific function: May Be Involved In Stress Response. [C]

COG id: COG3443

COG function: function code R; Predicted periplasmic or secreted protein

Gene ontology:

Cell location: Secreted (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. YodA family

Homologues:

Organism=Escherichia coli, GI1788284, Length=200, Percent_Identity=46, Blast_Score=192, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRPE_BACSU (O05410)

Other databases:

- EMBL:   U93875
- EMBL:   AL009126
- PIR:   E69978
- RefSeq:   NP_390560.1
- ProteinModelPortal:   O05410
- SMR:   O05410
- EnsemblBacteria:   EBBACT00000002411
- GeneID:   936254
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26830
- NMPDR:   fig|224308.1.peg.2685
- GenoList:   BSU26830
- GeneTree:   EBGT00050000000205
- HOGENOM:   HBG416258
- OMA:   HLYWGND
- PhylomeDB:   O05410
- ProtClustDB:   CLSK687650
- BioCyc:   BSUB:BSU26830-MONOMER
- GO:   GO:0005488
- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR015304
- Gene3D:   G3DSA:2.40.128.20

Pfam domain/function: PF09223 YodA; SSF50814 Calycin

EC number: NA

Molecular weight: Translated: 28870; Mature: 28870

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILFSKRLGILTIGSLLVLAGCQTSGSSAGESNQTTSSSAVEEDSSKTQEQTSDSHTHE
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
HSHDHSHAHDEETEKIYEGYFKNSQVKDRLLSDWEGDWQSVYPYLQDGTLDEVFSYKSEH
CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHCHHHCCCCHHHHHHHHHHC
EGGKTAEEYKEYYKKGYQTDVDRIVIQKDTVTFFKNGKEYSGKYTYDGYEILTYDAGNRG
CCCCCHHHHHHHHHCCCCCCCHHEEEECCHHHHHHCCCCCCCEEEECCEEEEEECCCCCH
VRYIFKLAKKAEGLPQYIQFSDHSIYPTKASHYHLYWGDDREALLDEVKNWPTYYPSKMD
HHHHHHHHHHHCCCCHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCC
GHDIAHEMMAH
HHHHHHHHHCC
>Mature Secondary Structure
MNILFSKRLGILTIGSLLVLAGCQTSGSSAGESNQTTSSSAVEEDSSKTQEQTSDSHTHE
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
HSHDHSHAHDEETEKIYEGYFKNSQVKDRLLSDWEGDWQSVYPYLQDGTLDEVFSYKSEH
CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHCHHHCCCCHHHHHHHHHHC
EGGKTAEEYKEYYKKGYQTDVDRIVIQKDTVTFFKNGKEYSGKYTYDGYEILTYDAGNRG
CCCCCHHHHHHHHHCCCCCCCHHEEEECCHHHHHHCCCCCCCEEEECCEEEEEECCCCCH
VRYIFKLAKKAEGLPQYIQFSDHSIYPTKASHYHLYWGDDREALLDEVKNWPTYYPSKMD
HHHHHHHHHHHCCCCHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCC
GHDIAHEMMAH
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377