Click here to switch to the map view.

The map label for this gene is azlB

Identifier: 16079725

GI number: 16079725

Start: 2729753

End: 2730226

Strand: Reverse

Name: azlB

Synonym: BSU26720

Alternate gene names: 16079725

Gene position: 2730226-2729753 (Counterclockwise)

Preceding gene: 16079726

Following gene: 16079724

Centisome position: 64.76

GC content: 36.29

Gene sequence:

>474_bases
ATGGGTATTATGCTTGACGAAACTGATAAGGCCATCTTAAGAGATTTGCAGGAAGATGCTTCAATATCAAATTTAAATTT
ATCTAAGAAAATTGGGCTTTCACCATCAGCTTGCCTTGCAAGAACAAAGAACCTAGTAGAAGCAGGTATAATTAAAAAGT
TTACGACTATTGTTGATGAGAAAAAACTTGGAATCGAAGTCACAGCACTAGCTCTCATCAACTTATCACCCTTAAATAGG
GAGACAATTCATTCATTTTTAGAGGATATAAACAAATTCCCACAGGTTCAAGAATGCTACACACTTACAGGAAGCCATGA
CTATATGCTTAAGATTGTGGCGAAGGACATGGAGAGTTATCGGAATTTTATCATTGATTCATTAATGCAGAACCCTGCTA
TTAGTGGAGTTGACACAAGCATAGTCATGAGTACAGAAAAAAGAACTGTCAGTGTGCCAATTGATGAAATGTAG

Upstream 100 bases:

>100_bases
AGGATTTAAATTTAAATAATATTTGATTAACGAATAAAAATTCGTTATTATTTAAATTGTATGAAATATAATTCTGTTAA
GTTGTATTGGGGGTTGTGAA

Downstream 100 bases:

>100_bases
GAGGTTGTTGATTTGAATAAAAATAAAGAATCGTTACATTTAAGCTCTCCTGCTATAAACACTCATATGAATAAGAGAAG
TCAAATATGGGCTGCATTTC

Product: Lrp/AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MGIMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDEKKLGIEVTALALINLSPLNR
ETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESYRNFIIDSLMQNPAISGVDTSIVMSTEKRTVSVPIDEM

Sequences:

>Translated_157_residues
MGIMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDEKKLGIEVTALALINLSPLNR
ETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESYRNFIIDSLMQNPAISGVDTSIVMSTEKRTVSVPIDEM
>Mature_156_residues
GIMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDEKKLGIEVTALALINLSPLNRE
TIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESYRNFIIDSLMQNPAISGVDTSIVMSTEKRTVSVPIDEM

Specific function: Transcriptional repressor of the azlBCD operon involved in branched-chain amino acid transport

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=33.1081081081081, Blast_Score=101, Evalue=2e-23,
Organism=Escherichia coli, GI87081742, Length=152, Percent_Identity=29.6052631578947, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AZLB_BACSU (O07920)

Other databases:

- EMBL:   Y11043
- EMBL:   U93876
- EMBL:   AL009126
- PIR:   F69592
- RefSeq:   NP_390549.1
- ProteinModelPortal:   O07920
- SMR:   O07920
- EnsemblBacteria:   EBBACT00000000767
- GeneID:   937625
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26720
- NMPDR:   fig|224308.1.peg.2674
- GenoList:   BSU26720
- GeneTree:   EBGT00070000032108
- HOGENOM:   HBG740878
- OMA:   EDASISN
- ProtClustDB:   CLSK383220
- BioCyc:   BSUB:BSU26720-MONOMER
- GO:   GO:0005622
- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00033
- SMART:   SM00344

Pfam domain/function: PF01037 AsnC_trans_reg; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 17464; Mature: 17333

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00519 HTH_ASNC_1; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDE
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KKLGIEVTALALINLSPLNRETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESY
HHCCEEEEEHEEEECCCCCHHHHHHHHHHHHHCCCHHHHHEECCCCHHHHHHHHHHHHHH
RNFIIDSLMQNPAISGVDTSIVMSTEKRTVSVPIDEM
HHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCCC
>Mature Secondary Structure 
GIMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDE
CCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KKLGIEVTALALINLSPLNRETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESY
HHCCEEEEEHEEEECCCCCHHHHHHHHHHHHHCCCHHHHHEECCCCHHHHHHHHHHHHHH
RNFIIDSLMQNPAISGVDTSIVMSTEKRTVSVPIDEM
HHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9287000; 9308178; 9384377