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The map label for this gene is yrkJ

Identifier: 16079702

GI number: 16079702

Start: 2710002

End: 2710787

Strand: Reverse

Name: yrkJ

Synonym: BSU26490

Alternate gene names: 16079702

Gene position: 2710787-2710002 (Counterclockwise)

Preceding gene: 16079703

Following gene: 255767612

Centisome position: 64.3

GC content: 37.28

Gene sequence:

>786_bases
ATGGATATTGCCTTTATCACAACTCTTTTCATTATAGGGTTTATTGGTGCCTTTATTTCCGGAATGATTGGTATTGGCGG
AGCAGTTATTAATTATCCAATGCTATTGTACATTCCTTCTTTAGTGGGAGTGATGTCATTAACTGCCCATGAAGTTTCAG
GGATAGGGGCTATTCAAGTTTTTTTTGCGACACTCGGCGGTGTTTGGGCTTATCGTAAGAGTGGTCTTATAAATAAAACA
TTAATTATTTACATGGGAAGCAGCATCCTTTTAGGGAGTGTATTGGGGAGTTACTTTTCTCATTATATATCTGAAAAAGG
AATTAACTTTATATACGGAATTCTGGCTATTATAGCAGTTATTTTAATGTTTATACCTAAAAAAGGACAGAAAGGACAAG
AACATAGCGAAGATAAGGAAGTGATATTTAATAAATGGTTGGCTTCTTCCTTAGCGTTTATCATTGGTGGCGTATCAGGT
ATTTTAGGAGCTGGCGGCGCCTTTATCCTAGTCCCCATTATGTTATCGATTTTAAATATTCCTGTTAGAGTCACAGTCGC
TTCATCTCTTGCGATTACATTTCTTTCATCCATTGGCGCAACAGTTGGAAAAGTAATCACGGGCCAGGTTCTTTTTGTAC
CAGCTCTGGTTCTTATGATTACTAGTTTAATAGCTTCTCCTATTGGCGCATCAGTTGGGCAAAAAGTAAATACAAAATTC
CTGCAATGGGTTTTAGCGCAATTAATAGGTGCGACAGCTATTAAAATTTGGTTAGAGCTCCTTTGA

Upstream 100 bases:

>100_bases
CGAGGGCGATATATTGAAATTTTGGATTCAAAAAGGCTAATGAATGTGAAAGGGTATCGAATAGAAAGATACCCTTTTCC
TATGAAAGGAGGCAAATAAA

Downstream 100 bases:

>100_bases
TATGAGCCAGCGGGTAAAATGAAAGATTAAAAGATTCATCACTCGTTGGTTTCTTATTAATGTTATGACACTTGGCCGCG
TTCAATAAATGTTTCAAGTG

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MDIAFITTLFIIGFIGAFISGMIGIGGAVINYPMLLYIPSLVGVMSLTAHEVSGIGAIQVFFATLGGVWAYRKSGLINKT
LIIYMGSSILLGSVLGSYFSHYISEKGINFIYGILAIIAVILMFIPKKGQKGQEHSEDKEVIFNKWLASSLAFIIGGVSG
ILGAGGAFILVPIMLSILNIPVRVTVASSLAITFLSSIGATVGKVITGQVLFVPALVLMITSLIASPIGASVGQKVNTKF
LQWVLAQLIGATAIKIWLELL

Sequences:

>Translated_261_residues
MDIAFITTLFIIGFIGAFISGMIGIGGAVINYPMLLYIPSLVGVMSLTAHEVSGIGAIQVFFATLGGVWAYRKSGLINKT
LIIYMGSSILLGSVLGSYFSHYISEKGINFIYGILAIIAVILMFIPKKGQKGQEHSEDKEVIFNKWLASSLAFIIGGVSG
ILGAGGAFILVPIMLSILNIPVRVTVASSLAITFLSSIGATVGKVITGQVLFVPALVLMITSLIASPIGASVGQKVNTKF
LQWVLAQLIGATAIKIWLELL
>Mature_261_residues
MDIAFITTLFIIGFIGAFISGMIGIGGAVINYPMLLYIPSLVGVMSLTAHEVSGIGAIQVFFATLGGVWAYRKSGLINKT
LIIYMGSSILLGSVLGSYFSHYISEKGINFIYGILAIIAVILMFIPKKGQKGQEHSEDKEVIFNKWLASSLAFIIGGVSG
ILGAGGAFILVPIMLSILNIPVRVTVASSLAITFLSSIGATVGKVITGQVLFVPALVLMITSLIASPIGASVGQKVNTKF
LQWVLAQLIGATAIKIWLELL

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0721 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRKJ_BACSU (P54437)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   H69976
- RefSeq:   NP_390526.1
- ProteinModelPortal:   P54437
- EnsemblBacteria:   EBBACT00000000108
- GeneID:   937654
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26490
- NMPDR:   fig|224308.1.peg.2651
- GenoList:   BSU26490
- GeneTree:   EBGT00050000001254
- HOGENOM:   HBG338105
- OMA:   MLLYLPP
- ProtClustDB:   CLSK2752455
- BioCyc:   BSUB:BSU26490-MONOMER
- InterPro:   IPR002781

Pfam domain/function: PF01925 DUF81

EC number: NA

Molecular weight: Translated: 27568; Mature: 27568

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11263c08)-; HASH(0x11248944)-; HASH(0x10b64564)-; HASH(0x1118c93c)-; HASH(0x11213e34)-; HASH(0x11263b90)-; HASH(0x112cea34)-; HASH(0x111beeb8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377