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The map label for this gene is yrkO

Identifier: 16079697

GI number: 16079697

Start: 2705398

End: 2706615

Strand: Direct

Name: yrkO

Synonym: BSU26440

Alternate gene names: 16079697

Gene position: 2705398-2706615 (Clockwise)

Preceding gene: 16079691

Following gene: 16079698

Centisome position: 64.18

GC content: 44.25

Gene sequence:

>1218_bases
ATGATTGTACAAAAAGAAGGACGCGGGCAACCGGTGAGTCTGCGGGAACGGGTTCATTTTCTGGACATCGTACGAGGATT
TGCCTTGCTTGGCATTATTATTGTCAATTATTTTCTGATCGTAGATTCAGTAAAGGGATTCGAAATGGCCTCCGATGACG
TACTGCATAAGCTGGTTTCCTGGTTTGCCGAAGGGAAATTCGTTACGTTATTCTCCTTCCTGTTCGGAGTCGGGTTTATG
ATCTTTATGGATCGAGCCGCGCAGAAGGTAGAGAGTCCCAACAAGCTGTTTGCCCGCAGGTTATCTATCCTGTTGGGATT
TGGCATTTTGCACATCACATTTGTTTGGGTCGGTGACATATTGGCCTTTTACGCCGTAAGTGGCTTCCTGTTACTCGCCT
TCTATAAACGCACGGCCAAAACGGTGCTTAGATGGATTATCGCACTTATCGTGTTTCAATTCCTGACTCCTGTTTTCACA
ATGTTGTACAATGTCATCAATACTGCAGGGTCAAAAAACCCGAATTTTTCAGAGTTTACTTTGTTTAGCCACAGCAGCCT
TACCTACATGGAATCCATCAGCACTCGGTGGACAGATATGGTCACGATGGCTGCCGGCTCTTTCTCTATGATCTATTCCA
TGTTTCTCATGTTTCTGCTGGGCGTGTACTTTGTTAAGATGGAATTTTTCAAAGACATGGAAGCGAAAAAGCCTATATGG
AAGCGTATCTGGATCATTAGCACAATCGCTTTTCTAATAACACAAAGCAGTATATTACTAGACATGTTTAATCTTTCTGA
GAATATGCTGTGGAAGGACATTTCCTCTGTCTTGGGTCAAAATGGCGGCTTAACCGGAAGTATGTTTTATATGAGCACTT
TTGCAATGCTGTTTCTATACCTTCCTCAGCTGCGAGGCCCTATGATGATATTCACCAAAGTCGGACGGATGTCATTGACC
TGTTATCTGCTTCACTCTATCATTGGAACAGTTCTGTTCCTCAGGTACGGATTCGGGCTTGCGGATCATATTCAATCCGC
CGGCACGTTCATGTTCAGTCTGGCCGTGTACTTCGTTCTTATGAGCTTTAGTACATTGTGGTTGAAACGGTTTAGGTACG
GTCCGATGGAATTAGTATGGCGCAAGCTGACGTACGGCAAAGTAAACGGGAGTCCCAAAGCAACTCCGCTGCATTCGGAA
AAATCTATTCAGAAATAA

Upstream 100 bases:

>100_bases
AAATTGTTAAGATTCGGTCTTTATATTTATCCATTGTAAGGCTCAAGTTTTTCAGATCCGCACTACACATTGCCGTGATA
AATGGGAAAGGAGTATTGAT

Downstream 100 bases:

>100_bases
CCCCCTTGCACAGATTGCATGACTTCAAATTAGTGTTGTTGAATGAAGCGGGCATTAAACGGACAGATTTGATATATGGA
CTAGTTATTTTTATATCATT

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MIVQKEGRGQPVSLRERVHFLDIVRGFALLGIIIVNYFLIVDSVKGFEMASDDVLHKLVSWFAEGKFVTLFSFLFGVGFM
IFMDRAAQKVESPNKLFARRLSILLGFGILHITFVWVGDILAFYAVSGFLLLAFYKRTAKTVLRWIIALIVFQFLTPVFT
MLYNVINTAGSKNPNFSEFTLFSHSSLTYMESISTRWTDMVTMAAGSFSMIYSMFLMFLLGVYFVKMEFFKDMEAKKPIW
KRIWIISTIAFLITQSSILLDMFNLSENMLWKDISSVLGQNGGLTGSMFYMSTFAMLFLYLPQLRGPMMIFTKVGRMSLT
CYLLHSIIGTVLFLRYGFGLADHIQSAGTFMFSLAVYFVLMSFSTLWLKRFRYGPMELVWRKLTYGKVNGSPKATPLHSE
KSIQK

Sequences:

>Translated_405_residues
MIVQKEGRGQPVSLRERVHFLDIVRGFALLGIIIVNYFLIVDSVKGFEMASDDVLHKLVSWFAEGKFVTLFSFLFGVGFM
IFMDRAAQKVESPNKLFARRLSILLGFGILHITFVWVGDILAFYAVSGFLLLAFYKRTAKTVLRWIIALIVFQFLTPVFT
MLYNVINTAGSKNPNFSEFTLFSHSSLTYMESISTRWTDMVTMAAGSFSMIYSMFLMFLLGVYFVKMEFFKDMEAKKPIW
KRIWIISTIAFLITQSSILLDMFNLSENMLWKDISSVLGQNGGLTGSMFYMSTFAMLFLYLPQLRGPMMIFTKVGRMSLT
CYLLHSIIGTVLFLRYGFGLADHIQSAGTFMFSLAVYFVLMSFSTLWLKRFRYGPMELVWRKLTYGKVNGSPKATPLHSE
KSIQK
>Mature_405_residues
MIVQKEGRGQPVSLRERVHFLDIVRGFALLGIIIVNYFLIVDSVKGFEMASDDVLHKLVSWFAEGKFVTLFSFLFGVGFM
IFMDRAAQKVESPNKLFARRLSILLGFGILHITFVWVGDILAFYAVSGFLLLAFYKRTAKTVLRWIIALIVFQFLTPVFT
MLYNVINTAGSKNPNFSEFTLFSHSSLTYMESISTRWTDMVTMAAGSFSMIYSMFLMFLLGVYFVKMEFFKDMEAKKPIW
KRIWIISTIAFLITQSSILLDMFNLSENMLWKDISSVLGQNGGLTGSMFYMSTFAMLFLYLPQLRGPMMIFTKVGRMSLT
CYLLHSIIGTVLFLRYGFGLADHIQSAGTFMFSLAVYFVLMSFSTLWLKRFRYGPMELVWRKLTYGKVNGSPKATPLHSE
KSIQK

Specific function: Involved in transport (Potential)

COG id: COG2311

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788475, Length=385, Percent_Identity=26.7532467532467, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRKO_BACSU (P54442)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   E69977
- RefSeq:   NP_390521.1
- ProteinModelPortal:   P54442
- EnsemblBacteria:   EBBACT00000000080
- GeneID:   937667
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26440
- NMPDR:   fig|224308.1.peg.2646
- GenoList:   BSU26440
- GeneTree:   EBGT00050000002861
- HOGENOM:   HBG623822
- OMA:   NKLFARR
- ProtClustDB:   CLSK887623
- BioCyc:   BSUB:BSU26440-MONOMER
- GO:   GO:0006810
- InterPro:   IPR007349

Pfam domain/function: PF04235 DUF418

EC number: NA

Molecular weight: Translated: 46432; Mature: 46432

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x111383d4)-; HASH(0x10126d84)-; HASH(0x109e4d64)-; HASH(0x10f27774)-; HASH(0x112557f8)-; HASH(0x112a6598)-; HASH(0x10f55090)-; HASH(0x10f355f8)-; HASH(0x1130adfc)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
>Mature Secondary Structure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HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377