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The map label for this gene is yqaE

Identifier: 16079688

GI number: 16079688

Start: 2698893

End: 2699243

Strand: Direct

Name: yqaE

Synonym: BSU26350

Alternate gene names: 16079688

Gene position: 2698893-2699243 (Clockwise)

Preceding gene: 16079676

Following gene: 16079691

Centisome position: 64.02

GC content: 35.9

Gene sequence:

>351_bases
ATGTTCTCCGAGAACTTGAAAAAGTGCAGAAAACAAAAGAAACTAACCCAACAAAATATGGCTGATAAACTTGGAATTAC
TCGGCCTGCCTACACCGCCTATGAACTAGGTAGTCGTGAGCCTGACTATAAAACCTTAATTAATATTTCAAACATACTTG
ATGTTTCTTTGGATTATCTTCTTAAAGGAGAAAGCAATGAAAAAGTATTTCAGGATGAAGCAAAAAAAGTGTTAAACGAT
CCTGAAACATTCCTTGCAGCAAAAGACGGTGAGGTAACAGATGAGATCTTACAGGCTGCTTTGGAGATTATAACGGAGCA
ATTAAAAGAAAGACGGAAATCAGATAAATAA

Upstream 100 bases:

>100_bases
TTTTCATAAAAAAAGTATCGTTTTGTTACCAAAACTTATATGTAACCCTTTGTTACGTTACAATGAGATATAGAATAAAA
ACAAAAGTCAGGTGATTAAT

Downstream 100 bases:

>100_bases
ACGCAGTTAGTTTATTATTATTTATTTCTGTTTATTATGTTTAATTCTGTTTACTAATAAGATTTAGATTCTCATTTATA
TTTCATTCATACCCTCATTT

Product: Xre family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYLLKGESNEKVFQDEAKKVLND
PETFLAAKDGEVTDEILQAALEIITEQLKERRKSDK

Sequences:

>Translated_116_residues
MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYLLKGESNEKVFQDEAKKVLND
PETFLAAKDGEVTDEILQAALEIITEQLKERRKSDK
>Mature_116_residues
MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYLLKGESNEKVFQDEAKKVLND
PETFLAAKDGEVTDEILQAALEIITEQLKERRKSDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQAE_BACSU (P45902)

Other databases:

- EMBL:   D32216
- EMBL:   D84432
- EMBL:   AL009126
- PIR:   D69944
- RefSeq:   NP_390512.1
- ProteinModelPortal:   P45902
- SMR:   P45902
- EnsemblBacteria:   EBBACT00000003097
- GeneID:   937672
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26350
- NMPDR:   fig|224308.1.peg.2637
- GenoList:   BSU26350
- GeneTree:   EBGT00070000032227
- HOGENOM:   HBG727458
- OMA:   ESTISMY
- ProtClustDB:   CLSK237116
- BioCyc:   BSUB:BSU26350-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 13311; Mature: 13311

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LKGESNEKVFQDEAKKVLNDPETFLAAKDGEVTDEILQAALEIITEQLKERRKSDK
HCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LKGESNEKVFQDEAKKVLNDPETFLAAKDGEVTDEILQAALEIITEQLKERRKSDK
HCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895