Click here to switch to the map view.

The map label for this gene is yqxM

Identifier: 16079520

GI number: 16079520

Start: 2554486

End: 2555247

Strand: Reverse

Name: yqxM

Synonym: BSU24640

Alternate gene names: 16079520

Gene position: 2555247-2554486 (Counterclockwise)

Preceding gene: 255767553

Following gene: 16079519

Centisome position: 60.61

GC content: 39.24

Gene sequence:

>762_bases
ATGTTTCGATTGTTTCACAATCAGCAAAAGGCGAAGACGAAACTGAAAGTTCTGCTTATCTTTCAGCTTTCAGTCATTTT
CAGTCTGACTGCCGCAATATGCTTACAATTTTCCGATGATACAAGCGCTGCTTTTCATGATATTGAAACATTTGATGTCT
CACTTCAAACGTGTAAAGACTTTCAGCATACAGATAAAAACTGCCATTATGATAAACGCTGGGATCAAAGTGATTTGCAC
ATATCAGATCAAACGGATACGAAAGGCACTGTATGCTCACCTTTCGCCTTATTTGCTGTGCTCGAAAATACAGGTGAGAA
ACTTAAGAAATCAAAGTGGAAGTGGGAGCTTCATAAGCTTGAAAATGCCCGCAAACCGTTAAAGGATGGGAACGTGATCG
AAAAAGGATTTGTCTCCAATCAAATCGGCGATTCACTTTATAAAATTGAGACCAAGAAAAAAATGAAACCCGGCATTTAT
GCATTTAAAGTATATAAACCGGCAGGCTACCCGGCAAACGGCAGTACATTTGAGTGGTCGGAGCCTATGAGGCTTGCAAA
ATGCGATGAAAAACCGACAGTCCCTAAAAAAGAAACAAAGTCGGACGTCAAAAAGGAGAATGAAACAACACAAAAAGATA
TACCGGAAAAAACAATGAAAGAAGAAACATCTCAAGAAGCTGTAACCAAAGAAAAAGAAACTCAATCAGACCAGAAGGAA
AGCGGGGAAGAGGATGAAAAAAGCAATGAAGCTGATCAGTAA

Upstream 100 bases:

>100_bases
TGTTTTTAAATCTATAAATCGTTGATTATACTCTATTTGTGAAGTTCTTTAAAGAGAACGATTGTCATATCAAGTTACAG
TGTTTTACAGGAGGTAAGAT

Downstream 100 bases:

>100_bases
TATTTTATACGTGATCATCTTTACTCTTATTATTGTGCTGACACTTGTCGTGATTTCAACACGTTCATCCGGGGGAGAGC
CGGCAGTGTTTGGGTATACG

Product: lipoprotein for biofilm formation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MFRLFHNQQKAKTKLKVLLIFQLSVIFSLTAAICLQFSDDTSAAFHDIETFDVSLQTCKDFQHTDKNCHYDKRWDQSDLH
ISDQTDTKGTVCSPFALFAVLENTGEKLKKSKWKWELHKLENARKPLKDGNVIEKGFVSNQIGDSLYKIETKKKMKPGIY
AFKVYKPAGYPANGSTFEWSEPMRLAKCDEKPTVPKKETKSDVKKENETTQKDIPEKTMKEETSQEAVTKEKETQSDQKE
SGEEDEKSNEADQ

Sequences:

>Translated_253_residues
MFRLFHNQQKAKTKLKVLLIFQLSVIFSLTAAICLQFSDDTSAAFHDIETFDVSLQTCKDFQHTDKNCHYDKRWDQSDLH
ISDQTDTKGTVCSPFALFAVLENTGEKLKKSKWKWELHKLENARKPLKDGNVIEKGFVSNQIGDSLYKIETKKKMKPGIY
AFKVYKPAGYPANGSTFEWSEPMRLAKCDEKPTVPKKETKSDVKKENETTQKDIPEKTMKEETSQEAVTKEKETQSDQKE
SGEEDEKSNEADQ
>Mature_253_residues
MFRLFHNQQKAKTKLKVLLIFQLSVIFSLTAAICLQFSDDTSAAFHDIETFDVSLQTCKDFQHTDKNCHYDKRWDQSDLH
ISDQTDTKGTVCSPFALFAVLENTGEKLKKSKWKWELHKLENARKPLKDGNVIEKGFVSNQIGDSLYKIETKKKMKPGIY
AFKVYKPAGYPANGSTFEWSEPMRLAKCDEKPTVPKKETKSDVKKENETTQKDIPEKTMKEETSQEAVTKEKETQSDQKE
SGEEDEKSNEADQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQXM_BACSU (P40949)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- EMBL:   M29691
- PIR:   G69968
- RefSeq:   NP_390344.1
- ProteinModelPortal:   P40949
- EnsemblBacteria:   EBBACT00000003357
- GeneID:   938532
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU24640
- NMPDR:   fig|224308.1.peg.2468
- GenoList:   BSU24640
- GeneTree:   EBGT00050000002183
- HOGENOM:   HBG338176
- OMA:   WKWELHK
- ProtClustDB:   CLSK887557
- BioCyc:   BSUB:BSU24640-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29075; Mature: 29075

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x109cff40)-;

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRLFHNQQKAKTKLKVLLIFQLSVIFSLTAAICLQFSDDTSAAFHDIETFDVSLQTCKD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FQHTDKNCHYDKRWDQSDLHISDQTDTKGTVCSPFALFAVLENTGEKLKKSKWKWELHKL
HHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENARKPLKDGNVIEKGFVSNQIGDSLYKIETKKKMKPGIYAFKVYKPAGYPANGSTFEWS
HHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCC
EPMRLAKCDEKPTVPKKETKSDVKKENETTQKDIPEKTMKEETSQEAVTKEKETQSDQKE
CCHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
SGEEDEKSNEADQ
CCCCHHCCCCCCH
>Mature Secondary Structure
MFRLFHNQQKAKTKLKVLLIFQLSVIFSLTAAICLQFSDDTSAAFHDIETFDVSLQTCKD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FQHTDKNCHYDKRWDQSDLHISDQTDTKGTVCSPFALFAVLENTGEKLKKSKWKWELHKL
HHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENARKPLKDGNVIEKGFVSNQIGDSLYKIETKKKMKPGIYAFKVYKPAGYPANGSTFEWS
HHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCC
EPMRLAKCDEKPTVPKKETKSDVKKENETTQKDIPEKTMKEETSQEAVTKEKETQSDQKE
CCHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
SGEEDEKSNEADQ
CCCCHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507524