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The map label for this gene is spcB

Identifier: 16079378

GI number: 16079378

Start: 2425248

End: 2425841

Strand: Reverse

Name: spcB

Synonym: BSU23210

Alternate gene names: 16079378

Gene position: 2425841-2425248 (Counterclockwise)

Preceding gene: 16079379

Following gene: 16079377

Centisome position: 57.54

GC content: 44.78

Gene sequence:

>594_bases
ATGGGGCTTGATATCGTGAATTGGAAAGCTATTGTGGAAGCCCTTCTTTATGCGGCAGGCGATGAAGGGCTTACAAAAAA
GCAGCTGTTAACAGTGCTTGAAATCGAAGAGCCTGAACTGAACACGATCATGGCGGATGTGGCGGACGAATACCGCGGAG
ATACACGAGGGATTGAACTTATTGAGTATGCAGATACGTACATGCTCTCTACCAAAAAAGACTTTGCGCCTTACTTGAAA
AAACTGATTGAAGTGCCGTCAAAGGGCCTTTCTCAAGCATCTTTAGAAGTACTGGCCATTGTTTCATACAAACAGCCAAT
TACGAGAGCAGAAATTGAAGAAATCAGAGGAGTAAAATCAGAGCGGATTTTACACAGTCTTGTCGCGAAGGCGCTATTGT
GTGAAGTAGGGCGTGCCGATGGTCCGGGGCGGGCCATTTTATACGGTACTACGCCGACTTTTCTTGAACAATTCGGTCTG
AAAACGCTGGACGAGCTTCCGCCGCTGCCTGAAAATGCGGAAGAAGACGTTCTTCAAGAAGAAGCAGATTTATTTTTTGA
AAACTTTAACCAAACCTTCGAAGATATAAAATAG

Upstream 100 bases:

>100_bases
ACCTTTCTAGCTGTTCTTGAGCTGATGAAAAATCAGCTGGTCCTCATTGAACAGGAGCACAATTTTTCAGATATTTACAT
TACGGGGAGTGAATCCATTC

Downstream 100 bases:

>100_bases
AAGTTTAATGAATCGCGCTTTTTCATCATCATAAGATATAAGGAAGAAGCTATCATGAAAGAAGCAAAATGTGAGAGACA
AATACATGAGGGGAAGATAC

Product: chromosome condensation and segregation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MGLDIVNWKAIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYMLSTKKDFAPYLK
KLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLVAKALLCEVGRADGPGRAILYGTTPTFLEQFGL
KTLDELPPLPENAEEDVLQEEADLFFENFNQTFEDIK

Sequences:

>Translated_197_residues
MGLDIVNWKAIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYMLSTKKDFAPYLK
KLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLVAKALLCEVGRADGPGRAILYGTTPTFLEQFGL
KTLDELPPLPENAEEDVLQEEADLFFENFNQTFEDIK
>Mature_196_residues
GLDIVNWKAIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYMLSTKKDFAPYLKK
LIEVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLVAKALLCEVGRADGPGRAILYGTTPTFLEQFGLK
TLDELPPLPENAEEDVLQEEADLFFENFNQTFEDIK

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_BACSU (P35155)

Other databases:

- EMBL:   L09228
- EMBL:   AL009126
- PIR:   S45550
- RefSeq:   NP_390202.1
- ProteinModelPortal:   P35155
- SMR:   P35155
- IntAct:   P35155
- EnsemblBacteria:   EBBACT00000000190
- GeneID:   938951
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU23210
- NMPDR:   fig|224308.1.peg.2325
- GenoList:   BSU23210
- GeneTree:   EBGT00050000002500
- HOGENOM:   HBG752450
- OMA:   TYKLTTS
- ProtClustDB:   CLSK887513
- BioCyc:   BSUB:BSU23210-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 22038; Mature: 21907

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLDIVNWKAIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIEL
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
IEYADTYMLSTKKDFAPYLKKLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVKS
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
ERILHSLVAKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPLPENAEEDVLQE
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHCHHHHHHCCCCCCCCHHHHHHH
EADLFFENFNQTFEDIK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GLDIVNWKAIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIEL
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
IEYADTYMLSTKKDFAPYLKKLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVKS
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
ERILHSLVAKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPLPENAEEDVLQE
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHCHHHHHHCCCCCCCCHHHHHHH
EADLFFENFNQTFEDIK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377