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The map label for this gene is ypjA

Identifier: 16079310

GI number: 16079310

Start: 2362407

End: 2362964

Strand: Reverse

Name: ypjA

Synonym: BSU22530

Alternate gene names: 16079310

Gene position: 2362964-2362407 (Counterclockwise)

Preceding gene: 16079311

Following gene: 16079309

Centisome position: 56.05

GC content: 43.55

Gene sequence:

>558_bases
ATGCTTATTCTTGTCTTAGCCATTAATTTTCTGGGAACGGTTTACGGCTACTATTGGTACTTGCCGCAGCTTTTGGAGAC
ACCGGCCCGTTTCCTGATTTTTGTTCCGGACAGTCCGACAGCAACGTTTTTCTTTCTGTTTGTGCTGCTTGCCTTTCTCA
TGAAACGGAATGCTCCGCTTTTAGAGGCGCTTGCGCTAGTTACCCTCGTAAAGTATGGCCTATGGGCGGTGGCTATGAAT
TTTCTTGTGCTTGCAGTAACTGGTGACTTGCCGTGGGAGGGCTACATGCTAATTGCTTCGCATTTTGCAATGGCAGTTCA
AGGCGTATTATACAGTCCGTATTTTCGTTTTTCATTTTGGCATCTTGCAATTGCTGCAGTCTGGACACTGCATAACGATG
TCATTGACTACTTGTTTGATATGATGCCGCAATACTCTATGCTTTCTGATTATATGACTGAAATAGGATACGGAACATTT
TGGCTAAGTATCTTTTCAATCGCGCTTGCTTACTTTCTTGTGGTCTCAAAAAAGCAAACGAAGCTTGAGCTGATGTAA

Upstream 100 bases:

>100_bases
GCTGACCCGGCGTCAGCTTTTTTATATGGACATATTATTTTTACAGACTGAGAGTTGATTCGATGTGAAATGGTTTCAAT
ATGTATTAGGGCAGCGGCCG

Downstream 100 bases:

>100_bases
AGACAATGTTGGTCTATCCTTGTCCCTTTCTTCATATTCTGTAAGGAGAGAGAGTGGGAGGGACCTGCATGAAACGAAAG
CTGACGATCTGTTTGTTGAT

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MLILVLAINFLGTVYGYYWYLPQLLETPARFLIFVPDSPTATFFFLFVLLAFLMKRNAPLLEALALVTLVKYGLWAVAMN
FLVLAVTGDLPWEGYMLIASHFAMAVQGVLYSPYFRFSFWHLAIAAVWTLHNDVIDYLFDMMPQYSMLSDYMTEIGYGTF
WLSIFSIALAYFLVVSKKQTKLELM

Sequences:

>Translated_185_residues
MLILVLAINFLGTVYGYYWYLPQLLETPARFLIFVPDSPTATFFFLFVLLAFLMKRNAPLLEALALVTLVKYGLWAVAMN
FLVLAVTGDLPWEGYMLIASHFAMAVQGVLYSPYFRFSFWHLAIAAVWTLHNDVIDYLFDMMPQYSMLSDYMTEIGYGTF
WLSIFSIALAYFLVVSKKQTKLELM
>Mature_185_residues
MLILVLAINFLGTVYGYYWYLPQLLETPARFLIFVPDSPTATFFFLFVLLAFLMKRNAPLLEALALVTLVKYGLWAVAMN
FLVLAVTGDLPWEGYMLIASHFAMAVQGVLYSPYFRFSFWHLAIAAVWTLHNDVIDYLFDMMPQYSMLSDYMTEIGYGTF
WLSIFSIALAYFLVVSKKQTKLELM

Specific function: Unknown

COG id: COG4347

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPJA_BACSU (P54392)

Other databases:

- EMBL:   L47709
- EMBL:   AL009126
- PIR:   A69937
- RefSeq:   NP_390134.1
- EnsemblBacteria:   EBBACT00000003453
- GeneID:   939018
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22530
- NMPDR:   fig|224308.1.peg.2257
- GenoList:   BSU22530
- GeneTree:   EBGT00050000002034
- HOGENOM:   HBG313421
- OMA:   LSHFAMA
- ProtClustDB:   CLSK887497
- BioCyc:   BSUB:BSU22530-MONOMER
- InterPro:   IPR009845

Pfam domain/function: PF07187 DUF1405

EC number: NA

Molecular weight: Translated: 21331; Mature: 21331

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb71bc3c)-; HASH(0x100502f4)-; HASH(0x1008ae54)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILVLAINFLGTVYGYYWYLPQLLETPARFLIFVPDSPTATFFFLFVLLAFLMKRNAPL
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCH
LEALALVTLVKYGLWAVAMNFLVLAVTGDLPWEGYMLIASHFAMAVQGVLYSPYFRFSFW
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
HLAIAAVWTLHNDVIDYLFDMMPQYSMLSDYMTEIGYGTFWLSIFSIALAYFLVVSKKQT
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHH
KLELM
HCCCH
>Mature Secondary Structure
MLILVLAINFLGTVYGYYWYLPQLLETPARFLIFVPDSPTATFFFLFVLLAFLMKRNAPL
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCH
LEALALVTLVKYGLWAVAMNFLVLAVTGDLPWEGYMLIASHFAMAVQGVLYSPYFRFSFW
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
HLAIAAVWTLHNDVIDYLFDMMPQYSMLSDYMTEIGYGTFWLSIFSIALAYFLVVSKKQT
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHH
KLELM
HCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377