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The map label for this gene is ypmB

Identifier: 16079295

GI number: 16079295

Start: 2348864

End: 2349349

Strand: Reverse

Name: ypmB

Synonym: BSU22380

Alternate gene names: 16079295

Gene position: 2349349-2348864 (Counterclockwise)

Preceding gene: 16079296

Following gene: 16079294

Centisome position: 55.73

GC content: 38.48

Gene sequence:

>486_bases
ATGAGAAAAAAAGCATTAATATTTACCGTCATTTTTGGTATTATTTTTTTAGCAGTACTTCTTGTCTCGGCAAGCATTTA
TAAATCAGCCATGGCACAAAAGGAAGAGGGGCACGAAGCAGCAGCTGCTGAAGCTAAAAAAGAAACCGATCTCGCCCATG
TTGATCAAGTCGAAACATTTGTCGGAAAAGAAAAATATTATGTTGTAAAGGGAACGGATAAAAAAGGCACTGCATTATAT
GTCTGGGTTCCTGCTGATAAAAAAGCAAAAATTCTCTCAAAAGAAGCGAAAGAGGGAATCTCTGAAGACAAAGCGGCGAA
AATCATAAAGGATGAAGGGCTGGTTTCAAAGCAAAAAGAGGTTCATCTGGCAAGAGAAGGAAACGTCCTGCTTTGGGAAG
TGACGTACTTAGACAAAGAAGGGCAATACAGTTTAAGTTATGTGGACTTTACAACTGGAAAGATTCTCAAAAATATCACG
CCTTAA

Upstream 100 bases:

>100_bases
ATCGTACACTGAAAAGAGACAATCTGATGTTCGGCCTTGCGCTGGATGAAGAAAACAAAAACCAAGCCGTTTTTACCATT
TATCGTACGTAGGTGAGAAG

Downstream 100 bases:

>100_bases
GACGAATTAGGGGGAGTTCAAGTTGAAACTGGCAAAAAGAGTATCCGCATTAACACCATCAACCACACTGGCAATCACAG
CGAAAGCGAAAGAACTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MRKKALIFTVIFGIIFLAVLLVSASIYKSAMAQKEEGHEAAAAEAKKETDLAHVDQVETFVGKEKYYVVKGTDKKGTALY
VWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTGKILKNIT
P

Sequences:

>Translated_161_residues
MRKKALIFTVIFGIIFLAVLLVSASIYKSAMAQKEEGHEAAAAEAKKETDLAHVDQVETFVGKEKYYVVKGTDKKGTALY
VWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTGKILKNIT
P
>Mature_161_residues
MRKKALIFTVIFGIIFLAVLLVSASIYKSAMAQKEEGHEAAAAEAKKETDLAHVDQVETFVGKEKYYVVKGTDKKGTALY
VWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTGKILKNIT
P

Specific function: Unknown

COG id: COG5353

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPMB_BACSU (P54396)

Other databases:

- EMBL:   L47709
- EMBL:   AL009126
- PIR:   F69938
- RefSeq:   NP_390119.1
- PDB:   2GU3
- PDBsum:   2GU3
- ProteinModelPortal:   P54396
- SMR:   P54396
- EnsemblBacteria:   EBBACT00000001499
- GeneID:   939035
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22380
- NMPDR:   fig|224308.1.peg.2242
- GenoList:   BSU22380
- GeneTree:   EBGT00050000002419
- HOGENOM:   HBG532907
- OMA:   LWEVTYL
- ProtClustDB:   CLSK887494
- BioCyc:   BSUB:BSU22380-MONOMER
- GO:   GO:0006508
- InterPro:   IPR015801
- InterPro:   IPR005075
- Gene3D:   G3DSA:3.10.450.40

Pfam domain/function: PF03413 PepSY

EC number: NA

Molecular weight: Translated: 17896; Mature: 17896

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xfb023fc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKALIFTVIFGIIFLAVLLVSASIYKSAMAQKEEGHEAAAAEAKKETDLAHVDQVETF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
VGKEKYYVVKGTDKKGTALYVWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKE
HCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHH
VHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTGKILKNITP
EEEECCCCEEEEEEEEECCCCCEEEEEEEECHHHHHHCCCH
>Mature Secondary Structure
MRKKALIFTVIFGIIFLAVLLVSASIYKSAMAQKEEGHEAAAAEAKKETDLAHVDQVETF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
VGKEKYYVVKGTDKKGTALYVWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKE
HCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHH
VHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTGKILKNITP
EEEECCCCEEEEEEEEECCCCCEEEEEEEECHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377