Click here to switch to the map view.

The map label for this gene is ypvA

Identifier: 16079273

GI number: 16079273

Start: 2327488

End: 2329413

Strand: Reverse

Name: ypvA

Synonym: BSU22150

Alternate gene names: 16079273

Gene position: 2329413-2327488 (Counterclockwise)

Preceding gene: 16079274

Following gene: 16079270

Centisome position: 55.26

GC content: 42.63

Gene sequence:

>1926_bases
GTGACAACATCACGTTTGCCTTTTTCTTTAACGAAAACAAAGAATTTTTATGAAGAATTGAACAATTGGATTGGTGACGT
GTTTTACGATATCCTTCCCGAAAAAGGGTTTGATCTTCGGGACGAGCAAGTATTTATGGCTTTTCAGCTGGAGCGGGCGT
TTAAAGAGAAAAAAGTCATGTTCGCCGAAGCTGGAGTGGGAACGGGGAAAACGCTGGTATATCTTCTTTTTGCAATCAGC
TATGCAAGGTATGTCGGCAAACCTGCCATCATCGCTTGTGCGGATGAAACATTAATTGAACAGCTGGTGAAAAAAGAGGG
CGATATTTCTAAGCTGGCTGAGCATCTTGATCTGAAAATTGATACAAGGCTGTCAAAATCACATGAGCAATATTTATGCT
TGAAGAAGCTTGAAAAAACAATGCAGCGTTCTGATGATGATAAATGGCTGGATCTTTATGAGTCGTTACCGTCATTTGTC
CACGAGTCCCAGGCGATGCAGCGCTTTTATCCGTATGGCGACCGTAAGCAGTACGCAAATCTATCGAATGAAGAGTGGTC
TGACGTAAGCTACGACTCGTTTCAGGACTGTCTGACTTGTGATATGAGACACAGATGCGGTCTGACACTTTCCAGAGATT
ACTACCGCAAGTCAACGGACTTAATCATTTGTTCCCATGATTTTTATATGGAGCATGTGTGGACGGAAGAATCACGCAAA
CGAGAGGGCCAGCTGCCGCTCTTGCCTGATCATAGTGCAGTTGTATTTGATGAGGGGCACTTGTTAGAGTTTGCTGCGCA
AAAAGCGCTAACCTATAGAGTGAAGCAGTCTACTCTTGAATTGTTTTTAGAACGATTGCTGCAAAATGACATCAGAGAAG
AGTTTGCAGAATTGATTGAAGATGCGCTTCTCGCAAACGACGAATTTTTCTATGTTCTTTCTGAAGAATCAAAGGAAGTA
GCCGGTTCACACCGTTTAGAAATAAAAAATGACCATCGTGTCAAAAAGGCGGCGGACGAGCTTTGCCGTTTACTTGATAA
AATCGGTGAGGCACTTGTATTTGAGTCTGAAATGTATACGATTGATCAATACGAACTGTCAGTAGTGGAAGAATATGTTG
AACAAATGGCGTATTCATTATCTCTATATCAAAAGGATGCGATCAGCTGGCTGGAGAAAAAGGAAGCAGAATCAACCTTT
GTCGTGATGCCGAGAACGGTAGCAGAAGTACTTGGCGAAAAAGTGTTTTCTAAGAAAATTCCTTATATCTTTTCTTCTGC
TACGCTGTCAGAAGGCGGTTCGTTTGATTATATTGCCGACAGTCTTGGGATTCATGATTATTTGTCATTAACTGTTGATT
CCCCTTATGATTATGACGAGCAAATGAGTATTAATCTATACGCAAAAACAGATATGGACGCTGAACAAAAAACGGCTGAA
ACGATTGAAACAATCAAACGATACAAAGGAAGAACGCTGGTGCTTTTCCCTTCTTTTGAAGAATTAAACGAGTTTAAAGA
GCTGTCGGCGGCATGGGAGCTGCCGTATCCAATTTTCTTCGAAGGTGATGAGGAAATCAGCAGCTTAGTAGAGAAATTCC
AAGAGGAAGAAGAAACAGTACTTTGTTCAGTTCACTTATGGGAAGGACTCGACATTCCCGGTGACGCATTGAAGAATGTT
ACCATTTGGTCATTACCGTTCCCGCCACACGATCCTGTATTTACAGCGAAGCGCAACGGAGCGAAAAAAGATCCGTTCGA
AGAAGTTGATCTGCCATATATGTTGTTACGTGTACGGCAGGGCATCGGGCGCCTGATTCGCTCGAATCAAGACAGCGGCT
CGATTCACATTTACGCTGGCGGAGAAAATGAACGCATCATTGATGAGGTCAAAAAGGTCTTGCCTGTTGAACCGCACATG
ATGTAA

Upstream 100 bases:

>100_bases
CTGCAAAAAACTTGGCATTGCCAAGTTTTTTATTGTATTCATCAGCGGAAAATGATATTATTGGTGGTCTGAATGTCGAA
TAGTTGGGGGTTGGAACTAG

Downstream 100 bases:

>100_bases
TGGAAAAAAGCTGACGATCGTTCGTCAGCTTTTTTATTTGTCAGCGGGATAGCCAGCCGCCATCAACTGCTAAAATATGT
CCATTTACATAATCTGAAGC

Product: ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 640

Protein sequence:

>641_residues
MTTSRLPFSLTKTKNFYEELNNWIGDVFYDILPEKGFDLRDEQVFMAFQLERAFKEKKVMFAEAGVGTGKTLVYLLFAIS
YARYVGKPAIIACADETLIEQLVKKEGDISKLAEHLDLKIDTRLSKSHEQYLCLKKLEKTMQRSDDDKWLDLYESLPSFV
HESQAMQRFYPYGDRKQYANLSNEEWSDVSYDSFQDCLTCDMRHRCGLTLSRDYYRKSTDLIICSHDFYMEHVWTEESRK
REGQLPLLPDHSAVVFDEGHLLEFAAQKALTYRVKQSTLELFLERLLQNDIREEFAELIEDALLANDEFFYVLSEESKEV
AGSHRLEIKNDHRVKKAADELCRLLDKIGEALVFESEMYTIDQYELSVVEEYVEQMAYSLSLYQKDAISWLEKKEAESTF
VVMPRTVAEVLGEKVFSKKIPYIFSSATLSEGGSFDYIADSLGIHDYLSLTVDSPYDYDEQMSINLYAKTDMDAEQKTAE
TIETIKRYKGRTLVLFPSFEELNEFKELSAAWELPYPIFFEGDEEISSLVEKFQEEEETVLCSVHLWEGLDIPGDALKNV
TIWSLPFPPHDPVFTAKRNGAKKDPFEEVDLPYMLLRVRQGIGRLIRSNQDSGSIHIYAGGENERIIDEVKKVLPVEPHM
M

Sequences:

>Translated_641_residues
MTTSRLPFSLTKTKNFYEELNNWIGDVFYDILPEKGFDLRDEQVFMAFQLERAFKEKKVMFAEAGVGTGKTLVYLLFAIS
YARYVGKPAIIACADETLIEQLVKKEGDISKLAEHLDLKIDTRLSKSHEQYLCLKKLEKTMQRSDDDKWLDLYESLPSFV
HESQAMQRFYPYGDRKQYANLSNEEWSDVSYDSFQDCLTCDMRHRCGLTLSRDYYRKSTDLIICSHDFYMEHVWTEESRK
REGQLPLLPDHSAVVFDEGHLLEFAAQKALTYRVKQSTLELFLERLLQNDIREEFAELIEDALLANDEFFYVLSEESKEV
AGSHRLEIKNDHRVKKAADELCRLLDKIGEALVFESEMYTIDQYELSVVEEYVEQMAYSLSLYQKDAISWLEKKEAESTF
VVMPRTVAEVLGEKVFSKKIPYIFSSATLSEGGSFDYIADSLGIHDYLSLTVDSPYDYDEQMSINLYAKTDMDAEQKTAE
TIETIKRYKGRTLVLFPSFEELNEFKELSAAWELPYPIFFEGDEEISSLVEKFQEEEETVLCSVHLWEGLDIPGDALKNV
TIWSLPFPPHDPVFTAKRNGAKKDPFEEVDLPYMLLRVRQGIGRLIRSNQDSGSIHIYAGGENERIIDEVKKVLPVEPHM
M
>Mature_640_residues
TTSRLPFSLTKTKNFYEELNNWIGDVFYDILPEKGFDLRDEQVFMAFQLERAFKEKKVMFAEAGVGTGKTLVYLLFAISY
ARYVGKPAIIACADETLIEQLVKKEGDISKLAEHLDLKIDTRLSKSHEQYLCLKKLEKTMQRSDDDKWLDLYESLPSFVH
ESQAMQRFYPYGDRKQYANLSNEEWSDVSYDSFQDCLTCDMRHRCGLTLSRDYYRKSTDLIICSHDFYMEHVWTEESRKR
EGQLPLLPDHSAVVFDEGHLLEFAAQKALTYRVKQSTLELFLERLLQNDIREEFAELIEDALLANDEFFYVLSEESKEVA
GSHRLEIKNDHRVKKAADELCRLLDKIGEALVFESEMYTIDQYELSVVEEYVEQMAYSLSLYQKDAISWLEKKEAESTFV
VMPRTVAEVLGEKVFSKKIPYIFSSATLSEGGSFDYIADSLGIHDYLSLTVDSPYDYDEQMSINLYAKTDMDAEQKTAET
IETIKRYKGRTLVLFPSFEELNEFKELSAAWELPYPIFFEGDEEISSLVEKFQEEEETVLCSVHLWEGLDIPGDALKNVT
IWSLPFPPHDPVFTAKRNGAKKDPFEEVDLPYMLLRVRQGIGRLIRSNQDSGSIHIYAGGENERIIDEVKKVLPVEPHMM

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain

Homologues:

Organism=Escherichia coli, GI1788110, Length=631, Percent_Identity=25.8320126782884, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1787018, Length=683, Percent_Identity=24.7437774524158, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPVA_BACSU (P50831)

Other databases:

- EMBL:   L47838
- EMBL:   AL009126
- PIR:   C69943
- RefSeq:   NP_390097.1
- ProteinModelPortal:   P50831
- SMR:   P50831
- EnsemblBacteria:   EBBACT00000003880
- GeneID:   939060
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22150
- NMPDR:   fig|224308.1.peg.2220
- GenoList:   BSU22150
- GeneTree:   EBGT00070000031732
- HOGENOM:   HBG305138
- OMA:   FAFTANS
- PhylomeDB:   P50831
- ProtClustDB:   CLSK873128
- BioCyc:   BSUB:BSU22150-MONOMER
- InterPro:   IPR014013
- InterPro:   IPR006555
- SMART:   SM00491

Pfam domain/function: NA

EC number: =3.6.4.12

Molecular weight: Translated: 74301; Mature: 74170

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS51193 HELICASE_ATP_BIND_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSRLPFSLTKTKNFYEELNNWIGDVFYDILPEKGFDLRDEQVFMAFQLERAFKEKKVM
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEE
FAEAGVGTGKTLVYLLFAISYARYVGKPAIIACADETLIEQLVKKEGDISKLAEHLDLKI
EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHCCEE
DTRLSKSHEQYLCLKKLEKTMQRSDDDKWLDLYESLPSFVHESQAMQRFYPYGDRKQYAN
EHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
LSNEEWSDVSYDSFQDCLTCDMRHRCGLTLSRDYYRKSTDLIICSHDFYMEHVWTEESRK
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEECHHHHCCCCCEEEEECHHHHHHHHCCHHHH
REGQLPLLPDHSAVVFDEGHLLEFAAQKALTYRVKQSTLELFLERLLQNDIREEFAELIE
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALLANDEFFYVLSEESKEVAGSHRLEIKNDHRVKKAADELCRLLDKIGEALVFESEMYT
HHHHCCCCEEEEECCCCHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHEECCCCEE
IDQYELSVVEEYVEQMAYSLSLYQKDAISWLEKKEAESTFVVMPRTVAEVLGEKVFSKKI
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCC
PYIFSSATLSEGGSFDYIADSLGIHDYLSLTVDSPYDYDEQMSINLYAKTDMDAEQKTAE
CCEEECCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHH
TIETIKRYKGRTLVLFPSFEELNEFKELSAAWELPYPIFFEGDEEISSLVEKFQEEEETV
HHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCEE
LCSVHLWEGLDIPGDALKNVTIWSLPFPPHDPVFTAKRNGAKKDPFEEVDLPYMLLRVRQ
EEEEEEECCCCCCCHHHCCCEEEECCCCCCCCCEECCCCCCCCCCHHHCCHHHHHHHHHH
GIGRLIRSNQDSGSIHIYAGGENERIIDEVKKVLPVEPHMM
HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TTSRLPFSLTKTKNFYEELNNWIGDVFYDILPEKGFDLRDEQVFMAFQLERAFKEKKVM
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEE
FAEAGVGTGKTLVYLLFAISYARYVGKPAIIACADETLIEQLVKKEGDISKLAEHLDLKI
EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHCCEE
DTRLSKSHEQYLCLKKLEKTMQRSDDDKWLDLYESLPSFVHESQAMQRFYPYGDRKQYAN
EHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
LSNEEWSDVSYDSFQDCLTCDMRHRCGLTLSRDYYRKSTDLIICSHDFYMEHVWTEESRK
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEECHHHHCCCCCEEEEECHHHHHHHHCCHHHH
REGQLPLLPDHSAVVFDEGHLLEFAAQKALTYRVKQSTLELFLERLLQNDIREEFAELIE
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALLANDEFFYVLSEESKEVAGSHRLEIKNDHRVKKAADELCRLLDKIGEALVFESEMYT
HHHHCCCCEEEEECCCCHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHEECCCCEE
IDQYELSVVEEYVEQMAYSLSLYQKDAISWLEKKEAESTFVVMPRTVAEVLGEKVFSKKI
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCC
PYIFSSATLSEGGSFDYIADSLGIHDYLSLTVDSPYDYDEQMSINLYAKTDMDAEQKTAE
CCEEECCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHH
TIETIKRYKGRTLVLFPSFEELNEFKELSAAWELPYPIFFEGDEEISSLVEKFQEEEETV
HHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCEE
LCSVHLWEGLDIPGDALKNVTIWSLPFPPHDPVFTAKRNGAKKDPFEEVDLPYMLLRVRQ
EEEEEEECCCCCCCHHHCCCEEEECCCCCCCCCEECCCCCCCCCCHHHCCHHHHHHHHHH
GIGRLIRSNQDSGSIHIYAGGENERIIDEVKKVLPVEPHMM
HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377