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The map label for this gene is yopS

Identifier: 16079137

GI number: 16079137

Start: 2203779

End: 2204003

Strand: Direct

Name: yopS

Synonym: BSU20780

Alternate gene names: 16079137

Gene position: 2203779-2204003 (Clockwise)

Preceding gene: 16079117

Following gene: 255767467

Centisome position: 52.28

GC content: 35.11

Gene sequence:

>225_bases
ATGATTAAAGTTGAGATCGGGCAATGCTTGATACCTGAATTATGTAGAAAGAAAGACATTACAATCAATGAACTTTCAGA
GATAACTGGGATTAAGAAACAGCAGCTGAGCGACTATAATCGATTAGTTAAAGTAGATATGTCTATTCGAACTGCAAAAA
GAATTGCTGCTGCTTTAGATTGTAATGTCGAAGACCTCTATGAATTCAAGGTTGAAAGGCATTGA

Upstream 100 bases:

>100_bases
ACATAGAAAGTAGGTGTTATGCTAGTGGTTATTTATCGGCTTCGTATGGTATGATATGTATTATGTCTTTCCATAACAGA
ACGCAGGAGGATGTCCGATT

Downstream 100 bases:

>100_bases
AACGACTAAGACTTTGGTCTTGGTCTCCTCCTTAGTAAACCATATGGTTTACATGACCATCTTACTACATTTAAACATGT
ATTTAAAGTGATTATTTTGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MIKVEIGQCLIPELCRKKDITINELSEITGIKKQQLSDYNRLVKVDMSIRTAKRIAAALDCNVEDLYEFKVERH

Sequences:

>Translated_74_residues
MIKVEIGQCLIPELCRKKDITINELSEITGIKKQQLSDYNRLVKVDMSIRTAKRIAAALDCNVEDLYEFKVERH
>Mature_74_residues
MIKVEIGQCLIPELCRKKDITINELSEITGIKKQQLSDYNRLVKVDMSIRTAKRIAAALDCNVEDLYEFKVERH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOPS_BACSU (O34766)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389960.1
- ProteinModelPortal:   O34766
- SMR:   O34766
- EnsemblBacteria:   EBBACT00000001555
- GeneID:   939428
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU20780
- NMPDR:   fig|224308.1.peg.2083
- GenoList:   BSU20780
- ProtClustDB:   CLSK337190
- BioCyc:   BSUB:BSU20780-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 8579; Mature: 8579

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVEIGQCLIPELCRKKDITINELSEITGIKKQQLSDYNRLVKVDMSIRTAKRIAAALD
CEEECCCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHC
CNVEDLYEFKVERH
CCHHHHHHHHHCCC
>Mature Secondary Structure
MIKVEIGQCLIPELCRKKDITINELSEITGIKKQQLSDYNRLVKVDMSIRTAKRIAAALD
CEEECCCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHC
CNVEDLYEFKVERH
CCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377