Click here to switch to the map view.

The map label for this gene is yotM

Identifier: 16079041

GI number: 16079041

Start: 2152265

End: 2152852

Strand: Reverse

Name: yotM

Synonym: BSU19830

Alternate gene names: 16079041

Gene position: 2152852-2152265 (Counterclockwise)

Preceding gene: 16079043

Following gene: 16079040

Centisome position: 51.07

GC content: 35.2

Gene sequence:

>588_bases
TTGGGAGCAAACAATCAAGGGAAAGTTTTTGAAGCGAACATTGAAAAATCTGCAGCAGATCAAAAGTTATTCTTTTACCG
GATTAAAGATGTTAACCCAATGTTCTTGAAAAGAGGGGCAGCAGTATCAAAAAACAAATATGATTGCTTTCTGTTCTTTA
AGGGGTACTTGTTCCCCTTTGAGCTTAAGTCGACAAAAAGCAAGTCCATTTCCTTCAGCGAGAAAATCATAAAGCCGCAG
CAGATTAAATATTTAAGGGAAGCAACACAATACCCAAACATAATCCCTGGTTTTCTGTTTCAATTTAGAGAGCCGGAAAA
CAAAGTTTATTTCGTACATATTAATGATTTCCTTACATATAAGAACATAGCTGAAAAACAGTTGAAACATACATATAAGA
ATAAAGTAAACAAAGCCAGTATCCCGATTGCGATTTGTGAAGAAATCGGTACTGAAGTGCGCTCGATGAAAAAGAAAGTG
AATTATACATATTATTTAAACAAGCTTTGCGGGGAACTAATTAAGAAAGAACAGTCAAGAGACAAACCATTACATACATA
TAATACTCCTGTGAAAACGGGGGTGTAG

Upstream 100 bases:

>100_bases
TCAACTGGTTTCCATTGTTTTTTCACTATGCACACCTCTTTCAGCAACGATTTTAGCACATACATAATTTACCTTCAATA
TAGATTAGGAGAGTGATTGA

Downstream 100 bases:

>100_bases
CCTTGGAACCTTACCAACGTTATGAGGAATTAAAGAAAAAAACAATAAAGGTAGTCCAGAAAGAAAATTACAGTATTCGA
TATATAACTCAGGATGAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MGANNQGKVFEANIEKSAADQKLFFYRIKDVNPMFLKRGAAVSKNKYDCFLFFKGYLFPFELKSTKSKSISFSEKIIKPQ
QIKYLREATQYPNIIPGFLFQFREPENKVYFVHINDFLTYKNIAEKQLKHTYKNKVNKASIPIAICEEIGTEVRSMKKKV
NYTYYLNKLCGELIKKEQSRDKPLHTYNTPVKTGV

Sequences:

>Translated_195_residues
MGANNQGKVFEANIEKSAADQKLFFYRIKDVNPMFLKRGAAVSKNKYDCFLFFKGYLFPFELKSTKSKSISFSEKIIKPQ
QIKYLREATQYPNIIPGFLFQFREPENKVYFVHINDFLTYKNIAEKQLKHTYKNKVNKASIPIAICEEIGTEVRSMKKKV
NYTYYLNKLCGELIKKEQSRDKPLHTYNTPVKTGV
>Mature_194_residues
GANNQGKVFEANIEKSAADQKLFFYRIKDVNPMFLKRGAAVSKNKYDCFLFFKGYLFPFELKSTKSKSISFSEKIIKPQQ
IKYLREATQYPNIIPGFLFQFREPENKVYFVHINDFLTYKNIAEKQLKHTYKNKVNKASIPIAICEEIGTEVRSMKKKVN
YTYYLNKLCGELIKKEQSRDKPLHTYNTPVKTGV

Specific function: Unknown

COG id: COG3331

COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOTM_BACSU (O34820)

Other databases:

- EMBL:   AF015775
- EMBL:   AF006665
- EMBL:   AL009126
- RefSeq:   NP_389864.1
- ProteinModelPortal:   O34820
- EnsemblBacteria:   EBBACT00000003059
- GeneID:   940081
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19830
- NMPDR:   fig|224308.1.peg.1987
- GenoList:   BSU19830
- OMA:   FEANIEK
- BioCyc:   BSUB:BSU19830-MONOMER
- InterPro:   IPR011335

Pfam domain/function: SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 22811; Mature: 22680

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGANNQGKVFEANIEKSAADQKLFFYRIKDVNPMFLKRGAAVSKNKYDCFLFFKGYLFPF
CCCCCCCCEEECCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCEEEEEEECCCCEE
ELKSTKSKSISFSEKIIKPQQIKYLREATQYPNIIPGFLFQFREPENKVYFVHINDFLTY
EECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEECCHHHH
KNIAEKQLKHTYKNKVNKASIPIAICEEIGTEVRSMKKKVNYTYYLNKLCGELIKKEQSR
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
DKPLHTYNTPVKTGV
CCCCEECCCCCCCCC
>Mature Secondary Structure 
GANNQGKVFEANIEKSAADQKLFFYRIKDVNPMFLKRGAAVSKNKYDCFLFFKGYLFPF
CCCCCCCEEECCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCEEEEEEECCCCEE
ELKSTKSKSISFSEKIIKPQQIKYLREATQYPNIIPGFLFQFREPENKVYFVHINDFLTY
EECCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEECCHHHH
KNIAEKQLKHTYKNKVNKASIPIAICEEIGTEVRSMKKKVNYTYYLNKLCGELIKKEQSR
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
DKPLHTYNTPVKTGV
CCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377