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The map label for this gene is yocM

Identifier: 16078986

GI number: 16078986

Start: 2098316

End: 2098792

Strand: Reverse

Name: yocM

Synonym: BSU19260

Alternate gene names: 16078986

Gene position: 2098792-2098316 (Counterclockwise)

Preceding gene: 16078989

Following gene: 16078985

Centisome position: 49.79

GC content: 40.46

Gene sequence:

>477_bases
ATGGATTTCGAAAAGATGAAGCAGTGGATGGAATTCGCACAGCAGATGTACGGCGGTGACTTTTGGAAACAGGTATTTGA
TGAAGACCAAAAAACCCCTTTTATGACAAATGGCCAATCTCCGTTTCCGTTTGCGCAGCAAGATCAGCGAGGGAAAGGAG
ATGCTTCATTTCCGAGCATGGATATTGTAGATACCGTTGCGGAAGTGCAGTTTTTAATTTATCTTCCAGGCTACCGTAAA
CAAGACGTTCACATATTATCGTACGGAGATTATTTAGTGGTGAAGGGGCAGCGCTTTTCCTATTTTAATGAACAGGACTT
TCGCCAAAAAGAAGGGAAATACGGAAGTTTTGAAAAGAAAATTCCGCTTTCCGATCATCTTCATGGAAAGATGAATGCCA
TTTTTAAAGACGGAATCCTATACATCACTATTCAAAAAGACGAAGGTCAAGCGAAAACCATTGTTATTGATGATTGA

Upstream 100 bases:

>100_bases
TATTAATATTGATATACGGAGTTGGTTGAACCACAGGCAAACCTCCTTTCTATAGTTGTATGCTGGCGGTTATAAAGTAT
GTTAAGACAGGGGGCTTCAA

Downstream 100 bases:

>100_bases
TTTTCATACTGAGTGCATCTGACACATCACGGTCATCAATTGATTCAATCGGAATGACCATAACAATACCATCTGCATTT
TGTTCCCCAAAACCGTTATT

Product: spore coat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MDFEKMKQWMEFAQQMYGGDFWKQVFDEDQKTPFMTNGQSPFPFAQQDQRGKGDASFPSMDIVDTVAEVQFLIYLPGYRK
QDVHILSYGDYLVVKGQRFSYFNEQDFRQKEGKYGSFEKKIPLSDHLHGKMNAIFKDGILYITIQKDEGQAKTIVIDD

Sequences:

>Translated_158_residues
MDFEKMKQWMEFAQQMYGGDFWKQVFDEDQKTPFMTNGQSPFPFAQQDQRGKGDASFPSMDIVDTVAEVQFLIYLPGYRK
QDVHILSYGDYLVVKGQRFSYFNEQDFRQKEGKYGSFEKKIPLSDHLHGKMNAIFKDGILYITIQKDEGQAKTIVIDD
>Mature_158_residues
MDFEKMKQWMEFAQQMYGGDFWKQVFDEDQKTPFMTNGQSPFPFAQQDQRGKGDASFPSMDIVDTVAEVQFLIYLPGYRK
QDVHILSYGDYLVVKGQRFSYFNEQDFRQKEGKYGSFEKKIPLSDHLHGKMNAIFKDGILYITIQKDEGQAKTIVIDD

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOCM_BACSU (O34321)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   B69902
- RefSeq:   NP_389808.1
- ProteinModelPortal:   O34321
- SMR:   O34321
- EnsemblBacteria:   EBBACT00000001070
- GeneID:   939587
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19260
- NMPDR:   fig|224308.1.peg.1931
- GenoList:   BSU19260
- GeneTree:   EBGT00050000001784
- HOGENOM:   HBG338074
- OMA:   YLPGYRK
- ProtClustDB:   CLSK887419
- BioCyc:   BSUB:BSU19260-MONOMER
- InterPro:   IPR002068
- InterPro:   IPR008978

Pfam domain/function: PF00011 HSP20; SSF49764 HSP20_chap

EC number: NA

Molecular weight: Translated: 18483; Mature: 18483

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFEKMKQWMEFAQQMYGGDFWKQVFDEDQKTPFMTNGQSPFPFAQQDQRGKGDASFPSM
CCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCH
DIVDTVAEVQFLIYLPGYRKQDVHILSYGDYLVVKGQRFSYFNEQDFRQKEGKYGSFEKK
HHHHHHHHHEEEEECCCCCCCCEEEEEECCEEEEECCCCCCCCCHHHHHHCCCCCCCCCC
IPLSDHLHGKMNAIFKDGILYITIQKDEGQAKTIVIDD
CCCCCCCCCHHHHEEECCEEEEEEECCCCCEEEEEEEC
>Mature Secondary Structure
MDFEKMKQWMEFAQQMYGGDFWKQVFDEDQKTPFMTNGQSPFPFAQQDQRGKGDASFPSM
CCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCH
DIVDTVAEVQFLIYLPGYRKQDVHILSYGDYLVVKGQRFSYFNEQDFRQKEGKYGSFEKK
HHHHHHHHHEEEEECCCCCCCCEEEEEECCEEEEECCCCCCCCCHHHHHHCCCCCCCCCC
IPLSDHLHGKMNAIFKDGILYITIQKDEGQAKTIVIDD
CCCCCCCCCHHHHEEECCEEEEEEECCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377