Click here to switch to the map view.

The map label for this gene is yocB

Identifier: 16078975

GI number: 16078975

Start: 2086743

End: 2087525

Strand: Reverse

Name: yocB

Synonym: BSU19150

Alternate gene names: 16078975

Gene position: 2087525-2086743 (Counterclockwise)

Preceding gene: 16078981

Following gene: 16078974

Centisome position: 49.52

GC content: 42.53

Gene sequence:

>783_bases
ATGGCGATTGATTCATTGATTAACAAATTACAGTATGTCCAATTGGAACCGCCGGATAAAATTCTCTCTCTGTATCTCAA
TACAGACATGAGAGATCCAGAGCAGCAGGGGGGAGAATGGAAGATTGCCCTAAAGTCAGGATTCAGCCGATTAAAAGAGT
ATTTGGCAGCTAGTGATCCAGAGGAGGAAAAGTGTCTGGATGGAATCAGGGCTAAAATGAATCAATACTTGAATGCAATG
GGAAAAGACATGCCCCGCAGTCTCGTGTTTTTTGTTTCCGACAGCGGCATATGGGAACCTATTAAGCTTCAAGTCCCTGT
AGATACAAGATTTTACTGGGAAGAAACAGCTGTCCTGGATCAGCTAAAGGGTTTGCGCCAGACATACCCAAGTACGGCGT
TTATTTTAACTCAGCAGCATGAAGTGAAAATTATTGAAACTGTTTTAGGAAAAATTGAGGCGGTGGAGCGTTATGAGTAT
GATATGATCAATGAGTCTTGGAAGAATAGCCATTCCGCTGTAGACAAAGCGCCACCATTTGAAGAGAACCGGATGAGGGA
ACATGTAACAGAGAACCAATCGAGACTGTATAAGCGGCTGGCTGCCAGCCTTGATCAAAAAGCTGCCGCGAAAAGATGGG
AACGAATGGTTATTGCCGGGGATAAAGAAACGGCCGATATCTTGGATCAGCATATGAATAAACCCATTCATTCGAAAATT
CAAAAGAACCTGCTGAATGAAAATGAACATAAGGTCATTGAACATTTGATAAAAGAGGCGTAA

Upstream 100 bases:

>100_bases
AACAACAATTCCATTATTACTAGAAATTAGCGGAAAGTCAGGTTTGATCGTTTTTAAGAGAGGAAAAAGAAAACTAACCT
GTGAAAAAGGAGGAATCGGA

Downstream 100 bases:

>100_bases
ACCTAACAGGCCGGGGCTAATAGCCTCCGGCCTTTGAAGTGTGTCTAATTTCTGACGAAGCAATCGAAACCGTTGACATC
TTCTTTGAATTTGCATACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAIDSLINKLQYVQLEPPDKILSLYLNTDMRDPEQQGGEWKIALKSGFSRLKEYLAASDPEEEKCLDGIRAKMNQYLNAM
GKDMPRSLVFFVSDSGIWEPIKLQVPVDTRFYWEETAVLDQLKGLRQTYPSTAFILTQQHEVKIIETVLGKIEAVERYEY
DMINESWKNSHSAVDKAPPFEENRMREHVTENQSRLYKRLAASLDQKAAAKRWERMVIAGDKETADILDQHMNKPIHSKI
QKNLLNENEHKVIEHLIKEA

Sequences:

>Translated_260_residues
MAIDSLINKLQYVQLEPPDKILSLYLNTDMRDPEQQGGEWKIALKSGFSRLKEYLAASDPEEEKCLDGIRAKMNQYLNAM
GKDMPRSLVFFVSDSGIWEPIKLQVPVDTRFYWEETAVLDQLKGLRQTYPSTAFILTQQHEVKIIETVLGKIEAVERYEY
DMINESWKNSHSAVDKAPPFEENRMREHVTENQSRLYKRLAASLDQKAAAKRWERMVIAGDKETADILDQHMNKPIHSKI
QKNLLNENEHKVIEHLIKEA
>Mature_259_residues
AIDSLINKLQYVQLEPPDKILSLYLNTDMRDPEQQGGEWKIALKSGFSRLKEYLAASDPEEEKCLDGIRAKMNQYLNAMG
KDMPRSLVFFVSDSGIWEPIKLQVPVDTRFYWEETAVLDQLKGLRQTYPSTAFILTQQHEVKIIETVLGKIEAVERYEYD
MINESWKNSHSAVDKAPPFEENRMREHVTENQSRLYKRLAASLDQKAAAKRWERMVIAGDKETADILDQHMNKPIHSKIQ
KNLLNENEHKVIEHLIKEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOCB_BACSU (O34516)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   G69900
- RefSeq:   NP_389796.1
- ProteinModelPortal:   O34516
- EnsemblBacteria:   EBBACT00000001478
- GeneID:   939442
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19150
- NMPDR:   fig|224308.1.peg.1919
- GenoList:   BSU19150
- GeneTree:   EBGT00050000002292
- HOGENOM:   HBG338069
- OMA:   QGGEWKI
- ProtClustDB:   CLSK887410
- BioCyc:   BSUB:BSU19150-MONOMER
- InterPro:   IPR019291

Pfam domain/function: PF10116 Host_attach

EC number: NA

Molecular weight: Translated: 30188; Mature: 30057

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDSLINKLQYVQLEPPDKILSLYLNTDMRDPEQQGGEWKIALKSGFSRLKEYLAASDP
CCHHHHHHHHHEEECCCHHHHHHHHHCCCCCCHHHCCCCEEEHHHHHHHHHHHHHHCCCC
EEEKCLDGIRAKMNQYLNAMGKDMPRSLVFFVSDSGIWEPIKLQVPVDTRFYWEETAVLD
CHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHH
QLKGLRQTYPSTAFILTQQHEVKIIETVLGKIEAVERYEYDMINESWKNSHSAVDKAPPF
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EENRMREHVTENQSRLYKRLAASLDQKAAAKRWERMVIAGDKETADILDQHMNKPIHSKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCHHHHHH
QKNLLNENEHKVIEHLIKEA
HHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AIDSLINKLQYVQLEPPDKILSLYLNTDMRDPEQQGGEWKIALKSGFSRLKEYLAASDP
CHHHHHHHHHEEECCCHHHHHHHHHCCCCCCHHHCCCCEEEHHHHHHHHHHHHHHCCCC
EEEKCLDGIRAKMNQYLNAMGKDMPRSLVFFVSDSGIWEPIKLQVPVDTRFYWEETAVLD
CHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHH
QLKGLRQTYPSTAFILTQQHEVKIIETVLGKIEAVERYEYDMINESWKNSHSAVDKAPPF
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EENRMREHVTENQSRLYKRLAASLDQKAAAKRWERMVIAGDKETADILDQHMNKPIHSKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCHHHHHH
QKNLLNENEHKVIEHLIKEA
HHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377