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The map label for this gene is yobV

Identifier: 16078970

GI number: 16078970

Start: 2083067

End: 2084008

Strand: Reverse

Name: yobV

Synonym: BSU19100

Alternate gene names: 16078970

Gene position: 2084008-2083067 (Counterclockwise)

Preceding gene: 16078972

Following gene: 16078969

Centisome position: 49.44

GC content: 43.1

Gene sequence:

>942_bases
ATGAAACTGGAACGTTTGTTAGCGATGGTTGTGTTATTGATCAGCAAAAAACAAGTGCAGGCTGCAGAGCTTGCTGAGCT
GTTTGAAGTATCTGTCAGAACAATTTACCGTGATATTGAGACGATCAATAGGGCTGGTATTCCGATTGTGACCTCACAGG
GTTCCGGGGGCGGAATTGGCATCATGGAAACGTATCGGCTTGAAAGAGAGTGGCTGAAGGAGGAGGAATTGTTTGCAATT
GCTTCCGCTTTGCAAAGCGTTTCATCTATGTATGAACCCGTTTCTCACAGCACAGCCTATCAAAAAATCAAACACCTTAT
ACCTGAGCAATCTACTCAAGCATTTAAGCACCAAACAGAAAAATGGTTTATTGACATGACGGCTTGGGGCCATACTGAGG
ATCAAAAGACGCTGCGCGAGAAAATCAGCGCTGCCATCGATCGGTTGTTAACGATATCTTTTACATATACAAGCGCAAGC
GGGGAAACACTACTTCGGGAAACTGAACCTTATACATTGGTTTGCAAGGCGGGGCACTGGTATTTATATGCCTACTGCCT
GGTAAGAAATGATTTTCGCTTTTTTAAACTGAACCGGATGAAAGATCTGGCCATCTTACATCAGACATTTATCAGAAAAG
ACATTCAGCTGGACACTTTGCCATGGGATAAGAGTTGGTACCAAAAGGACCGTTTAACTGAATTGGTTATTCTTGTTCAG
CCGTCAGCACGTCAGCGTATAGGTGAATGGTTCGGATATGATGTCCTTCACTGTTGTGAGGAAGATGAAATCTGCCAGGC
GGTGATTTCACTTCCAGAAGATCAATGGCTGATCGGTTTTTTGCTCCAGTTCGGAAAGGATATTGAGGTTCTGCAGCCTC
TTCATATAAGGGATAAAGTAAAAGAAACCATTCATCACATGCAAAAAATATATGAAACCTGA

Upstream 100 bases:

>100_bases
CATATGCGAGGTGTATTCCGCCGCATAATAGATATGCCCAAGCTTTATCAAAATGTTATGATTGTTTTGTTGGAAAATAC
AAGAAGAAAAGGTGCGCAGA

Downstream 100 bases:

>100_bases
CACACTGCTGTCAGGTTTCTTTGTCTATAATCTTAAAAAAAGGAGGAGATCGTATGGGCTTTTCACATATAACACACTTA
GACCTGAAACGATTTGCCGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKLERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIGIMETYRLEREWLKEEELFAI
ASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTEKWFIDMTAWGHTEDQKTLREKISAAIDRLLTISFTYTSAS
GETLLRETEPYTLVCKAGHWYLYAYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQKDRLTELVILVQ
PSARQRIGEWFGYDVLHCCEEDEICQAVISLPEDQWLIGFLLQFGKDIEVLQPLHIRDKVKETIHHMQKIYET

Sequences:

>Translated_313_residues
MKLERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIGIMETYRLEREWLKEEELFAI
ASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTEKWFIDMTAWGHTEDQKTLREKISAAIDRLLTISFTYTSAS
GETLLRETEPYTLVCKAGHWYLYAYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQKDRLTELVILVQ
PSARQRIGEWFGYDVLHCCEEDEICQAVISLPEDQWLIGFLLQFGKDIEVLQPLHIRDKVKETIHHMQKIYET
>Mature_313_residues
MKLERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIGIMETYRLEREWLKEEELFAI
ASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTEKWFIDMTAWGHTEDQKTLREKISAAIDRLLTISFTYTSAS
GETLLRETEPYTLVCKAGHWYLYAYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQKDRLTELVILVQ
PSARQRIGEWFGYDVLHCCEEDEICQAVISLPEDQWLIGFLLQFGKDIEVLQPLHIRDKVKETIHHMQKIYET

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBV_BACSU (O34920)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   D69900
- RefSeq:   NP_389791.1
- ProteinModelPortal:   O34920
- SMR:   O34920
- EnsemblBacteria:   EBBACT00000002462
- GeneID:   939644
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19100
- NMPDR:   fig|224308.1.peg.1914
- GenoList:   BSU19100
- GeneTree:   EBGT00050000004092
- HOGENOM:   HBG532980
- OMA:   GISIMER
- ProtClustDB:   CLSK887406
- BioCyc:   BSUB:BSU19100-MONOMER
- GO:   GO:0005737
- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00420

Pfam domain/function: PF08279 HTH_11

EC number: NA

Molecular weight: Translated: 36537; Mature: 36537

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00894 HTH_DEOR_1; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC
IMETYRLEREWLKEEELFAIASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCH
KWFIDMTAWGHTEDQKTLREKISAAIDRLLTISFTYTSASGETLLRETEPYTLVCKAGHW
HEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHCCCCEEEEEECCCC
YLYAYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQKDRLTELVILVQ
EEEEEHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHEEEEEEEC
PSARQRIGEWFGYDVLHCCEEDEICQAVISLPEDQWLIGFLLQFGKDIEVLQPLHIRDKV
CHHHHHHHHHHCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCHHHHHH
KETIHHMQKIYET
HHHHHHHHHHHCC
>Mature Secondary Structure
MKLERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC
IMETYRLEREWLKEEELFAIASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCH
KWFIDMTAWGHTEDQKTLREKISAAIDRLLTISFTYTSASGETLLRETEPYTLVCKAGHW
HEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHCCCCEEEEEECCCC
YLYAYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQKDRLTELVILVQ
EEEEEHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHEEEEEEEC
PSARQRIGEWFGYDVLHCCEEDEICQAVISLPEDQWLIGFLLQFGKDIEVLQPLHIRDKV
CHHHHHHHHHHCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCHHHHHH
KETIHHMQKIYET
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377