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The map label for this gene is yobU

Identifier: 16078969

GI number: 16078969

Start: 2082531

End: 2083013

Strand: Reverse

Name: yobU

Synonym: BSU19090

Alternate gene names: 16078969

Gene position: 2083013-2082531 (Counterclockwise)

Preceding gene: 16078970

Following gene: 16078968

Centisome position: 49.41

GC content: 42.86

Gene sequence:

>483_bases
ATGGGCTTTTCACATATAACACACTTAGACCTGAAACGATTTGCCGGACTATCACAACGGACAAGCAACGCACTGGAAAT
GACGGAAGAAAGGAGGATTCCGGCACTGTGGGATCAATTATGGAAGCAGGATATGAGCGCTCTTTTATCACAGGCTGAAA
AAGACAAGAGCATTATTGCCTTATATTCGAATTATGAACAAGAGACGAATGGGTTTTATACGTTTTCAGTCGGAACGTTT
CAGGAATACGACGACATTCTTCCGGGACCATATGAAAATATTGATTTGCCGGCTTCCGCTTACGCCGTTTTCACTTCCAG
AATCGGTCCTATTGAAGAGATTGTGCTTGAAACGTGGAAGGAAATTTGGACTTGGGATAAGCGGCATCTGCGCACGTTTA
CAGGTGACTTTGAGATGTATGATCAAAATGCCGCAGTGCCACAGCGAGCACAAGTTAACATTTATGTAGCGATAAAAAAA
TAA

Upstream 100 bases:

>100_bases
AAGTAAAAGAAACCATTCATCACATGCAAAAAATATATGAAACCTGACACACTGCTGTCAGGTTTCTTTGTCTATAATCT
TAAAAAAAGGAGGAGATCGT

Downstream 100 bases:

>100_bases
TAAACTCTTGAAAAACTAATGGTGTTAGTTAATAATAAAACTAACACCATTAGTTTTTGTTAGGAGGAATAAAAAGATGA
GAATTACTCAGTACCAAACG

Product: effector of transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MGFSHITHLDLKRFAGLSQRTSNALEMTEERRIPALWDQLWKQDMSALLSQAEKDKSIIALYSNYEQETNGFYTFSVGTF
QEYDDILPGPYENIDLPASAYAVFTSRIGPIEEIVLETWKEIWTWDKRHLRTFTGDFEMYDQNAAVPQRAQVNIYVAIKK

Sequences:

>Translated_160_residues
MGFSHITHLDLKRFAGLSQRTSNALEMTEERRIPALWDQLWKQDMSALLSQAEKDKSIIALYSNYEQETNGFYTFSVGTF
QEYDDILPGPYENIDLPASAYAVFTSRIGPIEEIVLETWKEIWTWDKRHLRTFTGDFEMYDQNAAVPQRAQVNIYVAIKK
>Mature_159_residues
GFSHITHLDLKRFAGLSQRTSNALEMTEERRIPALWDQLWKQDMSALLSQAEKDKSIIALYSNYEQETNGFYTFSVGTFQ
EYDDILPGPYENIDLPASAYAVFTSRIGPIEEIVLETWKEIWTWDKRHLRTFTGDFEMYDQNAAVPQRAQVNIYVAIKK

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBU_BACSU (O34637)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   C69900
- RefSeq:   NP_389790.1
- ProteinModelPortal:   O34637
- EnsemblBacteria:   EBBACT00000003379
- GeneID:   939647
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19090
- NMPDR:   fig|224308.1.peg.1913
- GenoList:   BSU19090
- GeneTree:   EBGT00050000000098
- HOGENOM:   HBG697246
- OMA:   MTEERRI
- ProtClustDB:   CLSK887405
- BioCyc:   BSUB:BSU19090-MONOMER
- InterPro:   IPR010499
- InterPro:   IPR011256
- SMART:   SM00871

Pfam domain/function: PF06445 AraC_E_bind; SSF55136 Bac_reg_effector

EC number: NA

Molecular weight: Translated: 18623; Mature: 18492

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFSHITHLDLKRFAGLSQRTSNALEMTEERRIPALWDQLWKQDMSALLSQAEKDKSIIA
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
LYSNYEQETNGFYTFSVGTFQEYDDILPGPYENIDLPASAYAVFTSRIGPIEEIVLETWK
EECCCHHCCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
EIWTWDKRHLRTFTGDFEMYDQNAAVPQRAQVNIYVAIKK
HHHHHCHHHHHHHCCCHHCCCCCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure 
GFSHITHLDLKRFAGLSQRTSNALEMTEERRIPALWDQLWKQDMSALLSQAEKDKSIIA
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
LYSNYEQETNGFYTFSVGTFQEYDDILPGPYENIDLPASAYAVFTSRIGPIEEIVLETWK
EECCCHHCCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
EIWTWDKRHLRTFTGDFEMYDQNAAVPQRAQVNIYVAIKK
HHHHHCHHHHHHHCCCHHCCCCCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377