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The map label for this gene is yobQ

Identifier: 16078965

GI number: 16078965

Start: 2079611

End: 2080336

Strand: Reverse

Name: yobQ

Synonym: BSU19050

Alternate gene names: 16078965

Gene position: 2080336-2079611 (Counterclockwise)

Preceding gene: 16078966

Following gene: 16078964

Centisome position: 49.35

GC content: 44.35

Gene sequence:

>726_bases
TTGCTAATGGACTCGCTTCAAGAGATAATTTGCGAAAAACGGACATACACACGGCTATATCATTCACATAAGCACGCGTA
CAGCCAATTTCTTTTTCCGCTTGAAGGGAGTATTGATCTTGAGACTGAGGGGCGCCAGGTGAAATTAAATCCGGATCATT
TTTTATATATTCCGCCGCAGTGCGAGCATCGCTTCCGTTCTATCGGAAGAAATGAATGTCTTGTACTGGATGTTCCGCTT
CATGCAATGAAAATTGATGAGTATCGTGCAGGATCAGGAATTGAAGCTGCCCTCGATCCTTTCTGGTCTTCGATCAGGTA
CTTGCTGACAGAGGAAGCAAAGGCCGGAACAGCCAACTCGCTTCATATGCTAGTACAATACATAAAAGAAAAGCTTCAAT
CCCATAGCTATGCCTCAATTGCATACATTCACAGCCATTTATTTGAGCGGCTGACGATTAAGAAGCTGGCAGAAATCGAG
CATTATCACCCAGCTTACTATTCAAGCTGGTTCAAAAAACAGACAGGGAAGTCCCCGCAGAACTATATTGCCGACCTTCG
CCTTGAGGAAGCAAAAAGAATGCTGATGGAGAGAAATGAAACTCTTACCGTCGTGAGCGAGGCGCTGGGCTTTCAAAACC
TTTCTTCTTTTACAAGATGGTTCACGAAAAGCACAGGAATGCCGCCCCGCCTGTATCGAAACACCTTATATTCGGATAAA
AAATGA

Upstream 100 bases:

>100_bases
TGAAAGAAAATCTGGCGGCAGTTTCTTTATATGGAAAAATCGGCTTTTCGCCTATATCGGAACACCATTACCGGATTAAA
AGATGACCAAAGGAAGGGGT

Downstream 100 bases:

>100_bases
TGGCTCTTTAGTTAAAAGAATATTGTATATCTCCTTTACAATAGGAGAAAAAGGAGTTATTGATATGGCAGTTATTGATG
ACTTTGAGAAATTGGATATC

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLMDSLQEIICEKRTYTRLYHSHKHAYSQFLFPLEGSIDLETEGRQVKLNPDHFLYIPPQCEHRFRSIGRNECLVLDVPL
HAMKIDEYRAGSGIEAALDPFWSSIRYLLTEEAKAGTANSLHMLVQYIKEKLQSHSYASIAYIHSHLFERLTIKKLAEIE
HYHPAYYSSWFKKQTGKSPQNYIADLRLEEAKRMLMERNETLTVVSEALGFQNLSSFTRWFTKSTGMPPRLYRNTLYSDK
K

Sequences:

>Translated_241_residues
MLMDSLQEIICEKRTYTRLYHSHKHAYSQFLFPLEGSIDLETEGRQVKLNPDHFLYIPPQCEHRFRSIGRNECLVLDVPL
HAMKIDEYRAGSGIEAALDPFWSSIRYLLTEEAKAGTANSLHMLVQYIKEKLQSHSYASIAYIHSHLFERLTIKKLAEIE
HYHPAYYSSWFKKQTGKSPQNYIADLRLEEAKRMLMERNETLTVVSEALGFQNLSSFTRWFTKSTGMPPRLYRNTLYSDK
K
>Mature_241_residues
MLMDSLQEIICEKRTYTRLYHSHKHAYSQFLFPLEGSIDLETEGRQVKLNPDHFLYIPPQCEHRFRSIGRNECLVLDVPL
HAMKIDEYRAGSGIEAALDPFWSSIRYLLTEEAKAGTANSLHMLVQYIKEKLQSHSYASIAYIHSHLFERLTIKKLAEIE
HYHPAYYSSWFKKQTGKSPQNYIADLRLEEAKRMLMERNETLTVVSEALGFQNLSSFTRWFTKSTGMPPRLYRNTLYSDK
K

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YOBQ_BACSU (O34901)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   G69899
- RefSeq:   NP_389786.1
- ProteinModelPortal:   O34901
- EnsemblBacteria:   EBBACT00000000439
- GeneID:   939637
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19050
- NMPDR:   fig|224308.1.peg.1909
- GenoList:   BSU19050
- GeneTree:   EBGT00050000000043
- HOGENOM:   HBG338067
- OMA:   CETRTYT
- ProtClustDB:   CLSK873126
- BioCyc:   BSUB:BSU19050-MONOMER
- GO:   GO:0005622
- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710
- Gene3D:   G3DSA:1.10.10.60
- Gene3D:   G3DSA:2.60.120.10
- SMART:   SM00342

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC; SSF46689 Homeodomain_like; SSF51182 RmlC_like_cupin

EC number: NA

Molecular weight: Translated: 28260; Mature: 28260

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMDSLQEIICEKRTYTRLYHSHKHAYSQFLFPLEGSIDLETEGRQVKLNPDHFLYIPPQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCCEEEECCH
CEHRFRSIGRNECLVLDVPLHAMKIDEYRAGSGIEAALDPFWSSIRYLLTEEAKAGTANS
HHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
LHMLVQYIKEKLQSHSYASIAYIHSHLFERLTIKKLAEIEHYHPAYYSSWFKKQTGKSPQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHH
NYIADLRLEEAKRMLMERNETLTVVSEALGFQNLSSFTRWFTKSTGMPPRLYRNTLYSDK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
K
C
>Mature Secondary Structure
MLMDSLQEIICEKRTYTRLYHSHKHAYSQFLFPLEGSIDLETEGRQVKLNPDHFLYIPPQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCCEEEECCH
CEHRFRSIGRNECLVLDVPLHAMKIDEYRAGSGIEAALDPFWSSIRYLLTEEAKAGTANS
HHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
LHMLVQYIKEKLQSHSYASIAYIHSHLFERLTIKKLAEIEHYHPAYYSSWFKKQTGKSPQ
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHH
NYIADLRLEEAKRMLMERNETLTVVSEALGFQNLSSFTRWFTKSTGMPPRLYRNTLYSDK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377