Click here to switch to the map view.

The map label for this gene is yobE

Identifier: 16078948

GI number: 16078948

Start: 2057801

End: 2058460

Strand: Direct

Name: yobE

Synonym: BSU18880

Alternate gene names: 16078948

Gene position: 2057801-2058460 (Clockwise)

Preceding gene: 16078947

Following gene: 255767446

Centisome position: 48.81

GC content: 39.55

Gene sequence:

>660_bases
ATGTGTGGCAAGTTCACTTTATTTTCTGAGTTTGATGACATCATTGAGCAATTCAACATAGATCAATTCTTACCTGAAGG
TGAATATCACCCTAGCTATAATGTCGCTCCTTCACAAAACATCCTGACAATTATCAACGATGGATCTAATAACCGTCTGG
GTAAACTTAGATGGGGTCTTATCCCTCCTTGTGCTAAAGACGAAAAGATCGGTTATAAAATGATTAATGCTCGTGCTGAA
ACATTGGCCGAGAAACCCAGCTTTCGAAAGCCGCTCGGAAGCAAACGTTGTATCATACCGGCTGACAGTTTTTATGAATG
GAAACGCCTTGATCCAAAGACTAAGATTCCTATGCGGATTAAACTTAAATCGTCGAATCTCTTTGCTTTTGCCGGCTTAT
ATGAAAAGTGGAACACGCTAGAAGGCAATCTGTTGTACACTTGCACAATCATCACAATAAAGCCTAGTGAGCTTATGGAA
GACATTCATGATCGGATGCCAGTTATCCTAACTGATGAGAACAAAAAGGAATGGCTAAATCCTAAAAATACTGATCCTGA
TTATCTACAAAGCTTGTTGCTGCCTTATGATGCTGATGACATGGAAGCATATCAGGTATCTTCATTAGTGAATTCACCTG
AGCTCATTGAATCCCATTAA

Upstream 100 bases:

>100_bases
TCCTTAACCCTCAACTGTTTGCTGCTGCATCACATTCCTCCTTTTTGATTTTTGTGTATCAAGCCTGTACAATATTCAAA
AACCCTAAAGGATGATGAAC

Downstream 100 bases:

>100_bases
GTACCACTGCCATATCGCTTTATATACCACCTCCTCTTAGCTAATATGTTCTAAGTAGGAGGTGGTATTTTGTTTGTATC
TCCAATGCTATTGCATTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MCGKFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGLIPPCAKDEKIGYKMINARAE
TLAEKPSFRKPLGSKRCIIPADSFYEWKRLDPKTKIPMRIKLKSSNLFAFAGLYEKWNTLEGNLLYTCTIITIKPSELME
DIHDRMPVILTDENKKEWLNPKNTDPDYLQSLLLPYDADDMEAYQVSSLVNSPELIESH

Sequences:

>Translated_219_residues
MCGKFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGLIPPCAKDEKIGYKMINARAE
TLAEKPSFRKPLGSKRCIIPADSFYEWKRLDPKTKIPMRIKLKSSNLFAFAGLYEKWNTLEGNLLYTCTIITIKPSELME
DIHDRMPVILTDENKKEWLNPKNTDPDYLQSLLLPYDADDMEAYQVSSLVNSPELIESH
>Mature_219_residues
MCGKFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGLIPPCAKDEKIGYKMINARAE
TLAEKPSFRKPLGSKRCIIPADSFYEWKRLDPKTKIPMRIKLKSSNLFAFAGLYEKWNTLEGNLLYTCTIITIKPSELME
DIHDRMPVILTDENKKEWLNPKNTDPDYLQSLLLPYDADDMEAYQVSSLVNSPELIESH

Specific function: Unknown

COG id: COG2135

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0361 family [H]

Homologues:

Organism=Homo sapiens, GI54607106, Length=259, Percent_Identity=28.1853281853282, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI54607104, Length=259, Percent_Identity=28.1853281853282, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI48994894, Length=190, Percent_Identity=28.9473684210526, Blast_Score=66, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323761, Length=189, Percent_Identity=31.7460317460317, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21355761, Length=246, Percent_Identity=26.8292682926829, Blast_Score=82, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003738 [H]

Pfam domain/function: PF02586 DUF159 [H]

EC number: NA

Molecular weight: Translated: 25241; Mature: 25241

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGKFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGL
CCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCC
IPPCAKDEKIGYKMINARAETLAEKPSFRKPLGSKRCIIPADSFYEWKRLDPKTKIPMRI
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCEEE
KLKSSNLFAFAGLYEKWNTLEGNLLYTCTIITIKPSELMEDIHDRMPVILTDENKKEWLN
EEECCCEEEEEEHHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCEEEECCCHHHHCC
PKNTDPDYLQSLLLPYDADDMEAYQVSSLVNSPELIESH
CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure
MCGKFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGL
CCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCC
IPPCAKDEKIGYKMINARAETLAEKPSFRKPLGSKRCIIPADSFYEWKRLDPKTKIPMRI
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCEEE
KLKSSNLFAFAGLYEKWNTLEGNLLYTCTIITIKPSELMEDIHDRMPVILTDENKKEWLN
EEECCCEEEEEEHHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCEEEECCCHHHHCC
PKNTDPDYLQSLLLPYDADDMEAYQVSSLVNSPELIESH
CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]