Click here to switch to the map view.

The map label for this gene is ynfE

Identifier: 16078875

GI number: 16078875

Start: 1942192

End: 1942455

Strand: Direct

Name: ynfE

Synonym: BSU18140

Alternate gene names: 16078875

Gene position: 1942192-1942455 (Clockwise)

Preceding gene: 50812243

Following gene: 16078878

Centisome position: 46.07

GC content: 35.98

Gene sequence:

>264_bases
GTGGATGAAATACTGAAACAGTATATGGTGCTGTATAAAAAAATGAGTAATATGATAAATGGTCCCGACTATCCAGGTAA
GGAAAAAGACATCCAGCATCAAAAAGATCAGATCGAAGTTTACGAAAAACAGCTGCAGCAAGGATTTTCTACAGATTATG
ACTATGATGTGTTTGCTGATTCTGTTATCAAATGCGCATATGGCGATATGACGCTGGAAGATTTAGAAGCCGTTTATTAT
GGATTGACAACACCATTTTTTTGA

Upstream 100 bases:

>100_bases
GGAAAACTGATTTGGGGAACAGAACCAAATTAGTTAAGCTTTTTTTTGGCGGACATCAGTAACGATGTCCGTTTTTATCA
TCTAATAGGAGGTTTGCGTT

Downstream 100 bases:

>100_bases
TTTGTCATTCAGCAGTAAAATTTCAATTTCTGTCTCACTAACTTAAGTATACTTTGATATTGAGACAGAAATTTATTTAT
TTTGTTTACTTCCTAGAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MDEILKQYMVLYKKMSNMINGPDYPGKEKDIQHQKDQIEVYEKQLQQGFSTDYDYDVFADSVIKCAYGDMTLEDLEAVYY
GLTTPFF

Sequences:

>Translated_87_residues
MDEILKQYMVLYKKMSNMINGPDYPGKEKDIQHQKDQIEVYEKQLQQGFSTDYDYDVFADSVIKCAYGDMTLEDLEAVYY
GLTTPFF
>Mature_87_residues
MDEILKQYMVLYKKMSNMINGPDYPGKEKDIQHQKDQIEVYEKQLQQGFSTDYDYDVFADSVIKCAYGDMTLEDLEAVYY
GLTTPFF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNFE_BACSU (Q45069)

Other databases:

- EMBL:   Z73234
- EMBL:   AL009126
- PIR:   D69892
- RefSeq:   NP_389696.1
- PhosSite:   Q45069
- EnsemblBacteria:   EBBACT00000000821
- GeneID:   936469
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU18140
- NMPDR:   fig|224308.1.peg.1817
- GenoList:   BSU18140
- GeneTree:   EBGT00050000006495
- HOGENOM:   HBG348935
- OMA:   VIKCAYG
- ProtClustDB:   CLSK237926
- BioCyc:   BSUB:BSU18140-MONOMER
- InterPro:   IPR020302
- ProDom:   PD062295

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10244; Mature: 10244

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEILKQYMVLYKKMSNMINGPDYPGKEKDIQHQKDQIEVYEKQLQQGFSTDYDYDVFAD
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SVIKCAYGDMTLEDLEAVYYGLTTPFF
HHHHHHCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDEILKQYMVLYKKMSNMINGPDYPGKEKDIQHQKDQIEVYEKQLQQGFSTDYDYDVFAD
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SVIKCAYGDMTLEDLEAVYYGLTTPFF
HHHHHHCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969507; 9384377