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The map label for this gene is yndF

Identifier: 16078840

GI number: 16078840

Start: 1910167

End: 1911381

Strand: Direct

Name: yndF

Synonym: BSU17770

Alternate gene names: 16078840

Gene position: 1910167-1911381 (Clockwise)

Preceding gene: 16078839

Following gene: 16078841

Centisome position: 45.31

GC content: 41.4

Gene sequence:

>1215_bases
GTGAAAAGTAAACTAAAACGTCAATTGCCTGCTATGGTCATAGTATGTCTGCTGATGATTTGCGTAACAGGATGCTGGAG
CAGTCGGGAAATAGAAGATCTGGGTCTCACATTCGCTATCGCAATTGATAAAGGAAAAGAAACGAACACTGAAAAAGAGT
TAAAAGAAGAGGGCGGGAGCTATCCGAAAAAAGACAACATTACGCTGACCTATCAATTTGTTAATGAAAAAGCGGCAGGC
GCGGGCACAAGCGGGGGAGGCGGTAGCGGACAAGGAGCGCAAAAAGCGTACATTAATATAAGTGAAACAGGGGATTCATT
ACAGCAGATCGGAAGTGAGGTTGCATTAAGACGGGACCGAGAAGTGTTTAGCCCGCATTTAAAAGTTGTTGTCATGAGTG
AAGATGTGCTGCACACATTTCCTATCGACGAAATGCTGGATCAATTTTTTCGTGATAATGAAATCAGGCTGAGCTGTCTT
GTTTTATCTGCTAAAGGGGAAGCAAGAGACGCTCTCCAGCTGAAAGAGAACGGAGAAATTCCGGCATTTCGGCTGATTGG
ATTAGGTGAAAATGAACATAAAGTTTCCAGAATTCTTCCCCCTATGACACTCGCGAAACTAATTGGAAAACTGCATTCTG
GCAGCAGCTTTTTACTGCAAAATGTGGTTGCGGCGAATGGAGCGGTCAAGTATTCCGGAGCAGCTGTAATCAACGGAAAA
TCGAAAAAAATGATAGGCACCTTAAATGAATATGAAACTGAGGGGATTACATGGATTAGAGGAGAAGGGAAAGGCGGAGT
TGTCAAAAGTCATGATAAAAAGAGCCAACAGACGTTAGCGTACGATATCAATAAAATCAAAAGCAGAATTCAGCCAATCG
TAAAAGGGAAAGATATTTCATTCCATGTCGATATTGAATCAGAAGGCGATTTGGTTGAAAACTGGAACACAAAAGAGGCG
TTGGACACCCAGTTTATAGATCGTCTCGAAACGACTATTGAAAACGAGGTAAAGAAAATAGTTGGTCAGGTATTAAAAAA
AATTCAGCATGATTATAAAGCAGATGTTGCGGGTTTTGATGAATCTTTTAGACTTACATATCCTCACTTATGGAAAAGGG
TGAAAAATAACTGGGATGACACCTTCAGTAAAGCCGACATCACATACAGTGTGAACGTCACAATTACTCATTTCGGCACG
GTTAAAACTCAGTAA

Upstream 100 bases:

>100_bases
GACGTCTTTATATTGGGCGATACGGTCAGTCATATCGCTTTGTATATATTTGGCGCTTTGCCGATTTTGCTGTTAGTCAT
TTCGAAATGGAGGAAAAGAG

Downstream 100 bases:

>100_bases
TGAATCCCAAGGAAGAGAAGGAAACCTCTCTTCTCTTTTTTATGCATTTATTAGGATAAAGATACTTTTTTTGGAGAGAT
ATACACTTTTCAAATCGACC

Product: spore germination lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MKSKLKRQLPAMVIVCLLMICVTGCWSSREIEDLGLTFAIAIDKGKETNTEKELKEEGGSYPKKDNITLTYQFVNEKAAG
AGTSGGGGSGQGAQKAYINISETGDSLQQIGSEVALRRDREVFSPHLKVVVMSEDVLHTFPIDEMLDQFFRDNEIRLSCL
VLSAKGEARDALQLKENGEIPAFRLIGLGENEHKVSRILPPMTLAKLIGKLHSGSSFLLQNVVAANGAVKYSGAAVINGK
SKKMIGTLNEYETEGITWIRGEGKGGVVKSHDKKSQQTLAYDINKIKSRIQPIVKGKDISFHVDIESEGDLVENWNTKEA
LDTQFIDRLETTIENEVKKIVGQVLKKIQHDYKADVAGFDESFRLTYPHLWKRVKNNWDDTFSKADITYSVNVTITHFGT
VKTQ

Sequences:

>Translated_404_residues
MKSKLKRQLPAMVIVCLLMICVTGCWSSREIEDLGLTFAIAIDKGKETNTEKELKEEGGSYPKKDNITLTYQFVNEKAAG
AGTSGGGGSGQGAQKAYINISETGDSLQQIGSEVALRRDREVFSPHLKVVVMSEDVLHTFPIDEMLDQFFRDNEIRLSCL
VLSAKGEARDALQLKENGEIPAFRLIGLGENEHKVSRILPPMTLAKLIGKLHSGSSFLLQNVVAANGAVKYSGAAVINGK
SKKMIGTLNEYETEGITWIRGEGKGGVVKSHDKKSQQTLAYDINKIKSRIQPIVKGKDISFHVDIESEGDLVENWNTKEA
LDTQFIDRLETTIENEVKKIVGQVLKKIQHDYKADVAGFDESFRLTYPHLWKRVKNNWDDTFSKADITYSVNVTITHFGT
VKTQ
>Mature_404_residues
MKSKLKRQLPAMVIVCLLMICVTGCWSSREIEDLGLTFAIAIDKGKETNTEKELKEEGGSYPKKDNITLTYQFVNEKAAG
AGTSGGGGSGQGAQKAYINISETGDSLQQIGSEVALRRDREVFSPHLKVVVMSEDVLHTFPIDEMLDQFFRDNEIRLSCL
VLSAKGEARDALQLKENGEIPAFRLIGLGENEHKVSRILPPMTLAKLIGKLHSGSSFLLQNVVAANGAVKYSGAAVINGK
SKKMIGTLNEYETEGITWIRGEGKGGVVKSHDKKSQQTLAYDINKIKSRIQPIVKGKDISFHVDIESEGDLVENWNTKEA
LDTQFIDRLETTIENEVKKIVGQVLKKIQHDYKADVAGFDESFRLTYPHLWKRVKNNWDDTFSKADITYSVNVTITHFGT
VKTQ

Specific function: May be involved in spore germination

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNDF_BACSU (O31810)

Other databases:

- EMBL:   AL009126
- PIR:   F69889
- RefSeq:   NP_389660.1
- ProteinModelPortal:   O31810
- SMR:   O31810
- EnsemblBacteria:   EBBACT00000002172
- GeneID:   939547
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17770
- NMPDR:   fig|224308.1.peg.1781
- GenoList:   BSU17770
- GeneTree:   EBGT00050000001336
- HOGENOM:   HBG339792
- OMA:   ENWNTKE
- ProtClustDB:   CLSK237390
- BioCyc:   BSUB:BSU17770-MONOMER
- InterPro:   IPR008844
- TIGRFAMs:   TIGR02887

Pfam domain/function: PF05504 Spore_GerAC

EC number: NA

Molecular weight: Translated: 44825; Mature: 44825

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS51257 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKLKRQLPAMVIVCLLMICVTGCWSSREIEDLGLTFAIAIDKGKETNTEKELKEEGGS
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHCCCC
YPKKDNITLTYQFVNEKAAGAGTSGGGGSGQGAQKAYINISETGDSLQQIGSEVALRRDR
CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCH
EVFSPHLKVVVMSEDVLHTFPIDEMLDQFFRDNEIRLSCLVLSAKGEARDALQLKENGEI
HHCCCCEEEEEEECCCHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHCCCCC
PAFRLIGLGENEHKVSRILPPMTLAKLIGKLHSGSSFLLQNVVAANGAVKYSGAAVINGK
CEEEEEECCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCEEEEECC
SKKMIGTLNEYETEGITWIRGEGKGGVVKSHDKKSQQTLAYDINKIKSRIQPIVKGKDIS
CCCEEECHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
FHVDIESEGDLVENWNTKEALDTQFIDRLETTIENEVKKIVGQVLKKIQHDYKADVAGFD
EEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCC
ESFRLTYPHLWKRVKNNWDDTFSKADITYSVNVTITHFGTVKTQ
CCCEECCHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEEEECC
>Mature Secondary Structure
MKSKLKRQLPAMVIVCLLMICVTGCWSSREIEDLGLTFAIAIDKGKETNTEKELKEEGGS
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHCCCC
YPKKDNITLTYQFVNEKAAGAGTSGGGGSGQGAQKAYINISETGDSLQQIGSEVALRRDR
CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCH
EVFSPHLKVVVMSEDVLHTFPIDEMLDQFFRDNEIRLSCLVLSAKGEARDALQLKENGEI
HHCCCCEEEEEEECCCHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHCCCCC
PAFRLIGLGENEHKVSRILPPMTLAKLIGKLHSGSSFLLQNVVAANGAVKYSGAAVINGK
CEEEEEECCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCEEEEECC
SKKMIGTLNEYETEGITWIRGEGKGGVVKSHDKKSQQTLAYDINKIKSRIQPIVKGKDIS
CCCEEECHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
FHVDIESEGDLVENWNTKEALDTQFIDRLETTIENEVKKIVGQVLKKIQHDYKADVAGFD
EEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCC
ESFRLTYPHLWKRVKNNWDDTFSKADITYSVNVTITHFGTVKTQ
CCCEECCHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377