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The map label for this gene is yndE

Identifier: 16078839

GI number: 16078839

Start: 1909086

End: 1910177

Strand: Direct

Name: yndE

Synonym: BSU17760

Alternate gene names: 16078839

Gene position: 1909086-1910177 (Clockwise)

Preceding gene: 16078838

Following gene: 16078840

Centisome position: 45.29

GC content: 40.38

Gene sequence:

>1092_bases
ATGTTCAGCCCAACCAGTAAAATCACAACCGCTCAGGCAACGATTATCATCATTAATTATATGCTTGCTGCCGGAGTTCT
TACGCTCCCTCGGACAGTAACAGAACAAACACAATCTCCTGATGGATGGATTTCAGTTTTATTAGGCGGGGTCCTAGCGG
TAATAGCCGGGATGATTATAGCTAAATTAAGCCAGCAGTATCCTAAGGAGACCTTTTATGAATACTCCCGACATATTGTA
GGAAAATGGCTCGGGCATCTGATCAGTATTGTTTTTATTACTTATTTTCTGGCACTCGGTGCATTTGAAGTCAGAGTCAT
GTCCGAAATCGTGGATTTTTTTCTCCTCGAAGGGACACCTTCTTGGGCCATCATTATGACAGTTCTTTGGATTGGGCTTT
ATTCAATTACACAAGGCCTAGATCCGATTGCACGGCTTTTTGAAATGATTTTTCCGATTACGGTCATCATCTTTTTAACG
ATAGCCCTCATGAGTTTAGGCATATTTGAGATCAACAATTTGCGCCCTGTATTAGGTGATGGAATCATGCCGGTTCTTAG
AGGTGTAAAGACAACGAACCTTTCATTTACATGTTCAGAAATTATGTTCATTTTAGTAGCATTTATGAAAAAGCCGAAAA
ATGCGGTGAAAGCAGTTGTGATCGGGACAGGCGTTGTGACCAGTTTTTATATGATTACGATGATTATGGTCATCGGTGCA
CTATCAGTTGAGGGAGTTGTGACGAGAACATGGCCGGGGCTTGACCTGATGAGAAGTTTTGAAATACCTGGTTTAATATT
TGAACGGTTTGAATCATTTCTGCTTGTGATTTGGATTATGCAGCTTTTTGCCACGTTTATTATCACTTTTTATGCAGCTT
CCCTGGGAGTCTCACAAGTTTTTAAAAAGAAACCCCTTTCATGTATGTTTGGGCTGCTTCCTGTTATATATATCCTCTCT
TGCATGCCGAAAAATGAAAATGACGTCTTTATATTGGGCGATACGGTCAGTCATATCGCTTTGTATATATTTGGCGCTTT
GCCGATTTTGCTGTTAGTCATTTCGAAATGGAGGAAAAGAGGTGAAAAGTAA

Upstream 100 bases:

>100_bases
GAATGCCTCTTTTAGTCATGAAGCGCCGGCCTAAAATGATGAATACAGATAATACAAAACGGGTGAAGTGATGAACTCGA
CAGGATGGTGATAAAGTCTC

Downstream 100 bases:

>100_bases
ACTAAAACGTCAATTGCCTGCTATGGTCATAGTATGTCTGCTGATGATTTGCGTAACAGGATGCTGGAGCAGTCGGGAAA
TAGAAGATCTGGGTCTCACA

Product: spore germination integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MFSPTSKITTAQATIIIINYMLAAGVLTLPRTVTEQTQSPDGWISVLLGGVLAVIAGMIIAKLSQQYPKETFYEYSRHIV
GKWLGHLISIVFITYFLALGAFEVRVMSEIVDFFLLEGTPSWAIIMTVLWIGLYSITQGLDPIARLFEMIFPITVIIFLT
IALMSLGIFEINNLRPVLGDGIMPVLRGVKTTNLSFTCSEIMFILVAFMKKPKNAVKAVVIGTGVVTSFYMITMIMVIGA
LSVEGVVTRTWPGLDLMRSFEIPGLIFERFESFLLVIWIMQLFATFIITFYAASLGVSQVFKKKPLSCMFGLLPVIYILS
CMPKNENDVFILGDTVSHIALYIFGALPILLLVISKWRKRGEK

Sequences:

>Translated_363_residues
MFSPTSKITTAQATIIIINYMLAAGVLTLPRTVTEQTQSPDGWISVLLGGVLAVIAGMIIAKLSQQYPKETFYEYSRHIV
GKWLGHLISIVFITYFLALGAFEVRVMSEIVDFFLLEGTPSWAIIMTVLWIGLYSITQGLDPIARLFEMIFPITVIIFLT
IALMSLGIFEINNLRPVLGDGIMPVLRGVKTTNLSFTCSEIMFILVAFMKKPKNAVKAVVIGTGVVTSFYMITMIMVIGA
LSVEGVVTRTWPGLDLMRSFEIPGLIFERFESFLLVIWIMQLFATFIITFYAASLGVSQVFKKKPLSCMFGLLPVIYILS
CMPKNENDVFILGDTVSHIALYIFGALPILLLVISKWRKRGEK
>Mature_363_residues
MFSPTSKITTAQATIIIINYMLAAGVLTLPRTVTEQTQSPDGWISVLLGGVLAVIAGMIIAKLSQQYPKETFYEYSRHIV
GKWLGHLISIVFITYFLALGAFEVRVMSEIVDFFLLEGTPSWAIIMTVLWIGLYSITQGLDPIARLFEMIFPITVIIFLT
IALMSLGIFEINNLRPVLGDGIMPVLRGVKTTNLSFTCSEIMFILVAFMKKPKNAVKAVVIGTGVVTSFYMITMIMVIGA
LSVEGVVTRTWPGLDLMRSFEIPGLIFERFESFLLVIWIMQLFATFIITFYAASLGVSQVFKKKPLSCMFGLLPVIYILS
CMPKNENDVFILGDTVSHIALYIFGALPILLLVISKWRKRGEK

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNDE_BACSU (O31809)

Other databases:

- EMBL:   AL009126
- PIR:   E69889
- RefSeq:   NP_389659.1
- ProteinModelPortal:   O31809
- EnsemblBacteria:   EBBACT00000001416
- GeneID:   936538
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17760
- NMPDR:   fig|224308.1.peg.1780
- GenoList:   BSU17760
- GeneTree:   EBGT00070000031777
- HOGENOM:   HBG338370
- OMA:   RHEERIT
- ProtClustDB:   CLSK2518233
- BioCyc:   BSUB:BSU17760-MONOMER
- InterPro:   IPR002293
- InterPro:   IPR004761
- PANTHER:   PTHR11785
- TIGRFAMs:   TIGR00912

Pfam domain/function: PF03845 Spore_permease

EC number: NA

Molecular weight: Translated: 40471; Mature: 40471

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf7e7494)-; HASH(0xf072100)-; HASH(0xf4f884c)-; HASH(0xf4c4c48)-; HASH(0xe424754)-; HASH(0xf468e7c)-; HASH(0xd07fb08)-; HASH(0xdb53630)-; HASH(0xf0ddd9c)-; HASH(0xf3b1df8)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCH
>Mature Secondary Structure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CCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377