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The map label for this gene is yndD

Identifier: 16078838

GI number: 16078838

Start: 1907494

End: 1909056

Strand: Direct

Name: yndD

Synonym: BSU17750

Alternate gene names: 16078838

Gene position: 1907494-1909056 (Clockwise)

Preceding gene: 255767422

Following gene: 16078839

Centisome position: 45.25

GC content: 42.74

Gene sequence:

>1563_bases
ATGATGAGGTGGCGGAACAATCAGTACAAAACACAGAAGCAGCATAAATCAGATTATTCGACAGCTGAAAAGCAGGATCA
GGATGTGTTAACCGGTAACATCGGATACGACTTAGAACATGTAAAAAGAAAAATAGGACATAACGGGGACGTTCATTTCC
GTGAGCTTGAAATCACTCAATTACATGTGAAAGCGGCATTGATCTTTGTTGAAGGACTGTCTGATCAGGACTTGATTAAT
AAAGGACTATCAGTGTTAGTCATGAATCAACCTAATCAGGTAAGCGATGAAATTTCTCAATCCGGCAAAGGTATTTTAAC
TTCGAAACAGATAAAAAATCAAATCGTATCAATCGGTGATGTCATAGATTCAGAGAAAATCAGTGATATCGTGTTGAATG
TTTTCATGGGTTCGACAGCGCTTCTCATCGATGGAATACCGCAGGCCTTTCTTCTGGGAACTGTAAAAAAACAAAATCGA
AGTATCGAGGAGCCGCTTTCAGAAGCGCTTGTCAGAGGGCCGCGCACAGGCTTTACAGAAGAGTTGAGTACGAATACAGC
TCTTTTGAGACAGCAAGGAAAAAATGATCAATTAACATTGCAGAGATTTGAAGTAGGAACACGATTAAAAAAGGATTTAA
TTATCGCTTATATGAATGACATTGCAGATCCAAAAGTAGTCGAGGAAGTAAGAAAAAGAGTGAGAGGGATTGAGATCGAT
CATTTGCCGGAGTCAGGCTACGTTGAACAGTTAATTGAGGATAATTATTTGAGCCCGTTCCCGCAAGTACAGAGTACAGA
ACGTCCTGATCGCGTCATAAGCGGATTAATGGAAGGAAGAGTAGCTATTCTGCTTGACGGCACTCCGTTTGCTTTGATTG
TTCCAGTCACTTTCAGCATGATGCTTCAATCGCCTGAAGATTATTATGAACGGTGGTTCCCGAGCTCGCTCATCAGATTG
CTGAGGTTCATCGCAGCAATGATAACGTTATTCGCACCCGCTTTATATATATCATTTATTTCTTTTCATCCTGGGTTAAT
TCCGACCAAGCTGGCGATTTCAATTTCCGGGACGCGCCAAGGTGTTCCGTTCCCATCTCTGATTGAAGCCTTATTTATGG
AAGTCGCGATTGAAATTTTAAGAGAGGCGGGGCTTCGTTTGCCAAAACCAATTGGACCCGCAATAGGCATAGTTGGCGGA
TTAATCATCGGGGAAGCAGCTGTGCAGGCGGGGATTGTCAGTCCAATCATGGTCATTGTTGTTGCGCTCACAGCAATTTC
TTCATTTGCCATCCCGCATTATAGCACAGGTATAGCACTTCGGATGCTTCGGTTTGGCGCGATGTTTTGTGCGGCGGTGT
TTGGATTGTTTGGAGTCATTATGTATTATCTGCTGCTAAGCAGCCATGTCGTAAAGCTAAAGAGCTTTGGTGTGCCATAC
GCAAGTCCGGCAGTGCCCTATCACTTAAAAGATTGGAAAGACTTTGTTATCAGAATGCCTCTTTTAGTCATGAAGCGCCG
GCCTAAAATGATGAATACAGATAATACAAAACGGGTGAAGTGA

Upstream 100 bases:

>100_bases
ACTTACTGACTGGAATGTGTGGTTTCAAGCGTTAGTAGTATTTCTCGTTCCATATGTAATCTATAAAGTGTTTACTTGGA
TTCATGTATAAGAAGGTGCA

Downstream 100 bases:

>100_bases
TGAACTCGACAGGATGGTGATAAAGTCTCATGTTCAGCCCAACCAGTAAAATCACAACCGCTCAGGCAACGATTATCATC
ATTAATTATATGCTTGCTGC

Product: spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MMRWRNNQYKTQKQHKSDYSTAEKQDQDVLTGNIGYDLEHVKRKIGHNGDVHFRELEITQLHVKAALIFVEGLSDQDLIN
KGLSVLVMNQPNQVSDEISQSGKGILTSKQIKNQIVSIGDVIDSEKISDIVLNVFMGSTALLIDGIPQAFLLGTVKKQNR
SIEEPLSEALVRGPRTGFTEELSTNTALLRQQGKNDQLTLQRFEVGTRLKKDLIIAYMNDIADPKVVEEVRKRVRGIEID
HLPESGYVEQLIEDNYLSPFPQVQSTERPDRVISGLMEGRVAILLDGTPFALIVPVTFSMMLQSPEDYYERWFPSSLIRL
LRFIAAMITLFAPALYISFISFHPGLIPTKLAISISGTRQGVPFPSLIEALFMEVAIEILREAGLRLPKPIGPAIGIVGG
LIIGEAAVQAGIVSPIMVIVVALTAISSFAIPHYSTGIALRMLRFGAMFCAAVFGLFGVIMYYLLLSSHVVKLKSFGVPY
ASPAVPYHLKDWKDFVIRMPLLVMKRRPKMMNTDNTKRVK

Sequences:

>Translated_520_residues
MMRWRNNQYKTQKQHKSDYSTAEKQDQDVLTGNIGYDLEHVKRKIGHNGDVHFRELEITQLHVKAALIFVEGLSDQDLIN
KGLSVLVMNQPNQVSDEISQSGKGILTSKQIKNQIVSIGDVIDSEKISDIVLNVFMGSTALLIDGIPQAFLLGTVKKQNR
SIEEPLSEALVRGPRTGFTEELSTNTALLRQQGKNDQLTLQRFEVGTRLKKDLIIAYMNDIADPKVVEEVRKRVRGIEID
HLPESGYVEQLIEDNYLSPFPQVQSTERPDRVISGLMEGRVAILLDGTPFALIVPVTFSMMLQSPEDYYERWFPSSLIRL
LRFIAAMITLFAPALYISFISFHPGLIPTKLAISISGTRQGVPFPSLIEALFMEVAIEILREAGLRLPKPIGPAIGIVGG
LIIGEAAVQAGIVSPIMVIVVALTAISSFAIPHYSTGIALRMLRFGAMFCAAVFGLFGVIMYYLLLSSHVVKLKSFGVPY
ASPAVPYHLKDWKDFVIRMPLLVMKRRPKMMNTDNTKRVK
>Mature_520_residues
MMRWRNNQYKTQKQHKSDYSTAEKQDQDVLTGNIGYDLEHVKRKIGHNGDVHFRELEITQLHVKAALIFVEGLSDQDLIN
KGLSVLVMNQPNQVSDEISQSGKGILTSKQIKNQIVSIGDVIDSEKISDIVLNVFMGSTALLIDGIPQAFLLGTVKKQNR
SIEEPLSEALVRGPRTGFTEELSTNTALLRQQGKNDQLTLQRFEVGTRLKKDLIIAYMNDIADPKVVEEVRKRVRGIEID
HLPESGYVEQLIEDNYLSPFPQVQSTERPDRVISGLMEGRVAILLDGTPFALIVPVTFSMMLQSPEDYYERWFPSSLIRL
LRFIAAMITLFAPALYISFISFHPGLIPTKLAISISGTRQGVPFPSLIEALFMEVAIEILREAGLRLPKPIGPAIGIVGG
LIIGEAAVQAGIVSPIMVIVVALTAISSFAIPHYSTGIALRMLRFGAMFCAAVFGLFGVIMYYLLLSSHVVKLKSFGVPY
ASPAVPYHLKDWKDFVIRMPLLVMKRRPKMMNTDNTKRVK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNDD_BACSU (O31808)

Other databases:

- EMBL:   AL009126
- PIR:   D69889
- RefSeq:   NP_389658.1
- ProteinModelPortal:   O31808
- EnsemblBacteria:   EBBACT00000003918
- GeneID:   939529
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17750
- NMPDR:   fig|224308.1.peg.1779
- GenoList:   BSU17750
- GeneTree:   EBGT00070000031745
- HOGENOM:   HBG343112
- OMA:   YLSPFPQ
- BioCyc:   BSUB:BSU17750-MONOMER
- InterPro:   IPR004995

Pfam domain/function: PF03323 GerA

EC number: NA

Molecular weight: Translated: 58005; Mature: 58005

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf1a2130)-; HASH(0xf273f0c)-; HASH(0xe036d94)-; HASH(0xe02d9a4)-; HASH(0xe901d3c)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRWRNNQYKTQKQHKSDYSTAEKQDQDVLTGNIGYDLEHVKRKIGHNGDVHFRELEITQ
CCCCCCCCHHHHHHHHHHCHHHHHCCCCCEECCCCCCHHHHHHHHCCCCCEEEEEEHHHH
LHVKAALIFVEGLSDQDLINKGLSVLVMNQPNQVSDEISQSGKGILTSKQIKNQIVSIGD
HHHHHHHHEEECCCCHHHHHCCCEEEEECCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHH
VIDSEKISDIVLNVFMGSTALLIDGIPQAFLLGTVKKQNRSIEEPLSEALVRGPRTGFTE
HHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCH
ELSTNTALLRQQGKNDQLTLQRFEVGTRLKKDLIIAYMNDIADPKVVEEVRKRVRGIEID
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
HLPESGYVEQLIEDNYLSPFPQVQSTERPDRVISGLMEGRVAILLDGTPFALIVPVTFSM
CCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHH
MLQSPEDYYERWFPSSLIRLLRFIAAMITLFAPALYISFISFHPGLIPTKLAISISGTRQ
HHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
GVPFPSLIEALFMEVAIEILREAGLRLPKPIGPAIGIVGGLIIGEAAVQAGIVSPIMVIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALTAISSFAIPHYSTGIALRMLRFGAMFCAAVFGLFGVIMYYLLLSSHVVKLKSFGVPY
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ASPAVPYHLKDWKDFVIRMPLLVMKRRPKMMNTDNTKRVK
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
>Mature Secondary Structure
MMRWRNNQYKTQKQHKSDYSTAEKQDQDVLTGNIGYDLEHVKRKIGHNGDVHFRELEITQ
CCCCCCCCHHHHHHHHHHCHHHHHCCCCCEECCCCCCHHHHHHHHCCCCCEEEEEEHHHH
LHVKAALIFVEGLSDQDLINKGLSVLVMNQPNQVSDEISQSGKGILTSKQIKNQIVSIGD
HHHHHHHHEEECCCCHHHHHCCCEEEEECCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHH
VIDSEKISDIVLNVFMGSTALLIDGIPQAFLLGTVKKQNRSIEEPLSEALVRGPRTGFTE
HHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCH
ELSTNTALLRQQGKNDQLTLQRFEVGTRLKKDLIIAYMNDIADPKVVEEVRKRVRGIEID
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
HLPESGYVEQLIEDNYLSPFPQVQSTERPDRVISGLMEGRVAILLDGTPFALIVPVTFSM
CCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHH
MLQSPEDYYERWFPSSLIRLLRFIAAMITLFAPALYISFISFHPGLIPTKLAISISGTRQ
HHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
GVPFPSLIEALFMEVAIEILREAGLRLPKPIGPAIGIVGGLIIGEAAVQAGIVSPIMVIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALTAISSFAIPHYSTGIALRMLRFGAMFCAAVFGLFGVIMYYLLLSSHVVKLKSFGVPY
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ASPAVPYHLKDWKDFVIRMPLLVMKRRPKMMNTDNTKRVK
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377