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The map label for this gene is ymcA

Identifier: 16078765

GI number: 16078765

Start: 1774374

End: 1774805

Strand: Direct

Name: ymcA

Synonym: BSU17020

Alternate gene names: 16078765

Gene position: 1774374-1774805 (Clockwise)

Preceding gene: 16078764

Following gene: 16078766

Centisome position: 42.09

GC content: 42.36

Gene sequence:

>432_bases
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Upstream 100 bases:

>100_bases
AAGGAAGCCATCGGCAAAATCGTCCGCGTGAAAATCCAGCAAGCGAAAACATGGTCGCTTGACGGAGAAATGGTAGGAGA
AGCAATCGAGGTGAAATGAG

Downstream 100 bases:

>100_bases
ACACGGTGCCTTTACAGGCCCGTGTTTTTTTATCATTTGTGCGGTTAAAAATGAACTAAATAATCTATGTACCAAATGTT
CAATTGGTTTTTCTGTGCTC

Product: master regulator for biofilm formation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Sequences:

>Translated_143_residues
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL
>Mature_142_residues
TLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEE
LEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Specific function: May work together with ylbF to regulate community development

COG id: COG4550

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMCA_BACSU (O31779)

Other databases:

- EMBL:   AL009126
- PIR:   C69884
- RefSeq:   NP_389584.1
- PDB:   2PIH
- PDBsum:   2PIH
- ProteinModelPortal:   O31779
- SMR:   O31779
- EnsemblBacteria:   EBBACT00000000323
- GeneID:   939581
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17020
- NMPDR:   fig|224308.1.peg.1705
- GenoList:   BSU17020
- GeneTree:   EBGT00050000001159
- HOGENOM:   HBG313559
- OMA:   DFFKRAE
- ProtClustDB:   CLSK873302
- BioCyc:   BSUB:BSU17020-MONOMER
- InterPro:   IPR016783
- InterPro:   IPR010368
- PIRSF:   PIRSF021287

Pfam domain/function: PF06133 DUF964

EC number: NA

Molecular weight: Translated: 16166; Mature: 16035

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHH
HYEKHEALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITS
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
TGGDLLKGETGSKVKHSNNSCSL
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHH
HYEKHEALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITS
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
TGGDLLKGETGSKVKHSNNSCSL
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377