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The map label for this gene is sdaAB

Identifier: 16078648

GI number: 16078648

Start: 1658242

End: 1658904

Strand: Direct

Name: sdaAB

Synonym: BSU15850

Alternate gene names: 16078648

Gene position: 1658242-1658904 (Clockwise)

Preceding gene: 16078647

Following gene: 16078649

Centisome position: 39.34

GC content: 45.55

Gene sequence:

>663_bases
ATGAAATACAGAAGCGTTTTTGATATTATCGGCCCGGTTATGATCGGTCCGTCCAGCTCTCATACAGCGGGAGCTGCTAG
AATCGGGAGAGTGGCCAGAAGTTTATTTGGCAGAGAGCCTGAGCGCATCATTGTATCTTTTTACGGCTCGTTTGCGGAAA
CGTATAAGGGCCACGGCACAGATGTCGCGATTATCGGCGGATTGCTTGATTTTGATACATTCGATGAACGGATTAAAACC
GCTATACAAATTGCAGAAGCTAAAGGAATTGATATAGAGTTTCGGGTAGAAGACGCAGTCCCGGTCCACCCGAACACAGC
AAAAATCACCATTTCTGATGAAAAGGGTGAGCTGGAACTGACGGGTATTTCGATTGGCGGAGGAAAGATTGAAATCACAG
AATTGAATGGTTTTGAGCTCCGGCTGTCAGGAAATCATCCGGCCATATTAGTTGTTCATAATGACAAGTTTGGCACAATT
GCCGGTGTTGCCAATGTTCTGGCGAAATTTTCAATCAACGTAGGACATATGGAAGTAGCCCGGAAAGATATCGGCCAGCT
TGCGCTGATGACAATAGAGGTCGATCAAAATATTGACGACCACATTCTCGACGAGCTGTCGAAGCTGCCGAATATTATTC
AAGTGACAAAGATTGCTGACTAG

Upstream 100 bases:

>100_bases
AGTGCGGCAGCGCTGTAACGCGCCCGCTTGCCATTTTATATCTGATCAATTAGTCTAGAAGCAAAGCGCTAATAAGCTCT
GGTTCATAAGGAGGAATAGC

Downstream 100 bases:

>100_bases
CGAAAAGGGTCAGGAGGAGCCAGTTATGTTTCGTAATGTAAAAGAATTAATTGAGATTACTAAAGAAAAACAAATATTGA
TCTCTGATGTGATGATAGCT

Product: L-serine dehydratase beta chain

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKYRSVFDIIGPVMIGPSSSHTAGAARIGRVARSLFGREPERIIVSFYGSFAETYKGHGTDVAIIGGLLDFDTFDERIKT
AIQIAEAKGIDIEFRVEDAVPVHPNTAKITISDEKGELELTGISIGGGKIEITELNGFELRLSGNHPAILVVHNDKFGTI
AGVANVLAKFSINVGHMEVARKDIGQLALMTIEVDQNIDDHILDELSKLPNIIQVTKIAD

Sequences:

>Translated_220_residues
MKYRSVFDIIGPVMIGPSSSHTAGAARIGRVARSLFGREPERIIVSFYGSFAETYKGHGTDVAIIGGLLDFDTFDERIKT
AIQIAEAKGIDIEFRVEDAVPVHPNTAKITISDEKGELELTGISIGGGKIEITELNGFELRLSGNHPAILVVHNDKFGTI
AGVANVLAKFSINVGHMEVARKDIGQLALMTIEVDQNIDDHILDELSKLPNIIQVTKIAD
>Mature_220_residues
MKYRSVFDIIGPVMIGPSSSHTAGAARIGRVARSLFGREPERIIVSFYGSFAETYKGHGTDVAIIGGLLDFDTFDERIKT
AIQIAEAKGIDIEFRVEDAVPVHPNTAKITISDEKGELELTGISIGGGKIEITELNGFELRLSGNHPAILVVHNDKFGTI
AGVANVLAKFSINVGHMEVARKDIGQLALMTIEVDQNIDDHILDELSKLPNIIQVTKIAD

Specific function: Deaminates Also Threonine, Particularly When It Is Present In High Concentration. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain

Homologues:

Organism=Escherichia coli, GI1789161, Length=151, Percent_Identity=37.0860927152318, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SDHB_BACSU (O34635)

Other databases:

- EMBL:   Y13937
- EMBL:   AL009126
- PIR:   F69879
- RefSeq:   NP_389467.1
- ProteinModelPortal:   O34635
- EnsemblBacteria:   EBBACT00000003875
- GeneID:   935964
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15850
- NMPDR:   fig|224308.1.peg.1587
- GenoList:   BSU15850
- GeneTree:   EBGT00050000001764
- HOGENOM:   HBG339819
- OMA:   HTAGACR
- ProtClustDB:   CLSK2518229
- BioCyc:   BSUB:BSU15850-MONOMER
- BRENDA:   4.3.1.17
- GO:   GO:0006094
- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131
- PIRSF:   PIRSF036692
- TIGRFAMs:   TIGR00719

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta

EC number: =4.3.1.17

Molecular weight: Translated: 23820; Mature: 23820

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYRSVFDIIGPVMIGPSSSHTAGAARIGRVARSLFGREPERIIVSFYGSFAETYKGHGT
CCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEHHHHHHHHCCCCC
DVAIIGGLLDFDTFDERIKTAIQIAEAKGIDIEFRVEDAVPVHPNTAKITISDEKGELEL
CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEE
TGISIGGGKIEITELNGFELRLSGNHPAILVVHNDKFGTIAGVANVLAKFSINVGHMEVA
EEEEECCCEEEEEEECCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHH
RKDIGQLALMTIEVDQNIDDHILDELSKLPNIIQVTKIAD
HHHHCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEEECC
>Mature Secondary Structure
MKYRSVFDIIGPVMIGPSSSHTAGAARIGRVARSLFGREPERIIVSFYGSFAETYKGHGT
CCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEHHHHHHHHCCCCC
DVAIIGGLLDFDTFDERIKTAIQIAEAKGIDIEFRVEDAVPVHPNTAKITISDEKGELEL
CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEE
TGISIGGGKIEITELNGFELRLSGNHPAILVVHNDKFGTIAGVANVLAKFSINVGHMEVA
EEEEECCCEEEEEEECCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHH
RKDIGQLALMTIEVDQNIDDHILDELSKLPNIIQVTKIAD
HHHHCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377