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The map label for this gene is ylbK

Identifier: 16078568

GI number: 16078568

Start: 1571981

End: 1572763

Strand: Direct

Name: ylbK

Synonym: BSU15040

Alternate gene names: 16078568

Gene position: 1571981-1572763 (Clockwise)

Preceding gene: 16078566

Following gene: 255767342

Centisome position: 37.29

GC content: 46.87

Gene sequence:

>783_bases
TTGGCCAAACCTAAAATCGGGTTAGCGTTAGGATCGGGAGGGGCCAGAGGGCTTGCTCATCTCGGTGTGCTTTCCAGTTT
ACATAAGCACCAAATTGAAGTGGATATGATTGCAGGAAGCAGCATGGGCGCTTTGGTGGGCAGTTTTTACGCCGCCGGAC
ATGACGTGGCAACGATGAAAAAAGTAGCCAAAGCCTTTAAACGAAGGCTTTATGCTGATTATACGGTGCCGAAACTCGGT
TTTTTAAAAGGTGACCGCGTCAGACAGCTTGTGCATGCTTATACATTCGGAAAACCGATTGAAGAGCTCCAAATCCCGCT
GGGCATTGTTGCGTGTGATCTACAGACGGGAGAAAAGATTGTGTTCCGAAAAGGATCAGTGTCAGATGCAGTGAGGGCCA
GCATCAGCATCCCGGGTATCTTTATTCCGCAGCGGCTGGACGGACGCCTTCTTGTAGACGGCGCGGTCGTCGATCGAATT
CCGGTTTCTGTTGTGAAAGACATGGGAGCTGATATTATCATCGCTTCGGATGTTTCCAGGGTTCGAAAAACTGAAACAGC
AGTGCATATTTTTGATGTGATTATGCAAAGTATGGATATACTGCAAAATGAATTAGTGCGGCATCAAACAATTGCCGCAG
ATATCATGATTCGCCCTTCCCTTGAAACATACAGCTCAAGCTCGTTTGCCAATATTGAAGAAATGATATCGGCAGGCGAA
GAGGCGACAAACCGAATGATCAGCAAGATAAGAAAAGAAATAGAGAATTGGGAGGGCTCATAA

Upstream 100 bases:

>100_bases
TACCTGTCCTCTTGATTCTTTGTACTAATATACGAGCATAGGGGTTCAGTTTAGACCATAGAATTCGGTATACAGGGAAT
TCAGGCAGGAGGTTAACGCT

Downstream 100 bases:

>100_bases
TTTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCAT
ACTATATTACAAAACCGGGA

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAKPKIGLALGSGGARGLAHLGVLSSLHKHQIEVDMIAGSSMGALVGSFYAAGHDVATMKKVAKAFKRRLYADYTVPKLG
FLKGDRVRQLVHAYTFGKPIEELQIPLGIVACDLQTGEKIVFRKGSVSDAVRASISIPGIFIPQRLDGRLLVDGAVVDRI
PVSVVKDMGADIIIASDVSRVRKTETAVHIFDVIMQSMDILQNELVRHQTIAADIMIRPSLETYSSSSFANIEEMISAGE
EATNRMISKIRKEIENWEGS

Sequences:

>Translated_260_residues
MAKPKIGLALGSGGARGLAHLGVLSSLHKHQIEVDMIAGSSMGALVGSFYAAGHDVATMKKVAKAFKRRLYADYTVPKLG
FLKGDRVRQLVHAYTFGKPIEELQIPLGIVACDLQTGEKIVFRKGSVSDAVRASISIPGIFIPQRLDGRLLVDGAVVDRI
PVSVVKDMGADIIIASDVSRVRKTETAVHIFDVIMQSMDILQNELVRHQTIAADIMIRPSLETYSSSSFANIEEMISAGE
EATNRMISKIRKEIENWEGS
>Mature_259_residues
AKPKIGLALGSGGARGLAHLGVLSSLHKHQIEVDMIAGSSMGALVGSFYAAGHDVATMKKVAKAFKRRLYADYTVPKLGF
LKGDRVRQLVHAYTFGKPIEELQIPLGIVACDLQTGEKIVFRKGSVSDAVRASISIPGIFIPQRLDGRLLVDGAVVDRIP
VSVVKDMGADIIIASDVSRVRKTETAVHIFDVIMQSMDILQNELVRHQTIAADIMIRPSLETYSSSSFANIEEMISAGEE
ATNRMISKIRKEIENWEGS

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain

Homologues:

Organism=Homo sapiens, GI260656037, Length=192, Percent_Identity=31.25, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI260656043, Length=192, Percent_Identity=31.25, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI260656041, Length=192, Percent_Identity=31.25, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI116256487, Length=192, Percent_Identity=31.25, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI260656039, Length=192, Percent_Identity=31.25, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI148727335, Length=270, Percent_Identity=28.1481481481481, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI148727290, Length=270, Percent_Identity=28.1481481481481, Blast_Score=102, Evalue=4e-22,
Organism=Escherichia coli, GI226510936, Length=295, Percent_Identity=32.2033898305085, Blast_Score=137, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI193204778, Length=166, Percent_Identity=33.1325301204819, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71997299, Length=271, Percent_Identity=25.830258302583, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71997289, Length=271, Percent_Identity=25.830258302583, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6323581, Length=267, Percent_Identity=26.5917602996255, Blast_Score=102, Evalue=8e-23,
Organism=Drosophila melanogaster, GI281376913, Length=182, Percent_Identity=35.1648351648352, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI28571388, Length=182, Percent_Identity=35.1648351648352, Blast_Score=92, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLBK_BACSU (O34731)

Other databases:

- EMBL:   Z98682
- EMBL:   AL009126
- PIR:   H69874
- RefSeq:   NP_389387.1
- ProteinModelPortal:   O34731
- SMR:   O34731
- EnsemblBacteria:   EBBACT00000000512
- GeneID:   936382
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU15040
- NMPDR:   fig|224308.1.peg.1506
- GenoList:   BSU15040
- GeneTree:   EBGT00050000003024
- HOGENOM:   HBG729555
- OMA:   ERVVFRE
- PhylomeDB:   O34731
- ProtClustDB:   CLSK2752394
- BioCyc:   BSUB:BSU15040-MONOMER
- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641

Pfam domain/function: PF01734 Patatin; SSF52151 Acyl_Trfase/lysoPlipase

EC number: NA

Molecular weight: Translated: 28258; Mature: 28127

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS01237 UPF0028

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPKIGLALGSGGARGLAHLGVLSSLHKHQIEVDMIAGSSMGALVGSFYAAGHDVATMK
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCHHHHHH
KVAKAFKRRLYADYTVPKLGFLKGDRVRQLVHAYTFGKPIEELQIPLGIVACDLQTGEKI
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCEEEEEECCCCCEE
VFRKGSVSDAVRASISIPGIFIPQRLDGRLLVDGAVVDRIPVSVVKDMGADIIIASDVSR
EEECCCCHHHHHHHCCCCCEECCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECCHHH
VRKTETAVHIFDVIMQSMDILQNELVRHQTIAADIMIRPSLETYSSSSFANIEEMISAGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHCCCCCCCHHHHHHCCH
EATNRMISKIRKEIENWEGS
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKPKIGLALGSGGARGLAHLGVLSSLHKHQIEVDMIAGSSMGALVGSFYAAGHDVATMK
CCCCEEEEECCCCCHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCHHHHHH
KVAKAFKRRLYADYTVPKLGFLKGDRVRQLVHAYTFGKPIEELQIPLGIVACDLQTGEKI
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCEEEEEECCCCCEE
VFRKGSVSDAVRASISIPGIFIPQRLDGRLLVDGAVVDRIPVSVVKDMGADIIIASDVSR
EEECCCCHHHHHHHCCCCCEECCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECCHHH
VRKTETAVHIFDVIMQSMDILQNELVRHQTIAADIMIRPSLETYSSSSFANIEEMISAGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHCCCCCCCHHHHHHCCH
EATNRMISKIRKEIENWEGS
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377