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The map label for this gene is ylbF

Identifier: 16078563

GI number: 16078563

Start: 1568420

End: 1568869

Strand: Direct

Name: ylbF

Synonym: BSU14990

Alternate gene names: 16078563

Gene position: 1568420-1568869 (Clockwise)

Preceding gene: 16078562

Following gene: 16078564

Centisome position: 37.21

GC content: 48.22

Gene sequence:

>450_bases
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Upstream 100 bases:

>100_bases
GGTCTTTTTTCATGCGGTCATAAGGTTTTGTTGGCGGCTGCGGTTAAGCATTTTCCAATTGGCTGGTTTCATGGTAAACT
AACAACTGGAGGTGCATGTT

Downstream 100 bases:

>100_bases
CGAGACTGGCCGTCTCGTCTTTTACATATAAGAGAAAACAGGCAGGTGATTGTATTGGAGAATAGGCGCCAGGGCATGGT
TGTGTATCTGCACTCCCTAA

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Sequences:

>Translated_149_residues
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS
>Mature_149_residues
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Specific function: Regulates sporulation prior to stage II. Positively controls the competence regulator ComK at a post-transcriptional level. May modulate the translation, stability or activity of ComS. May work together with YmcA to regulate community development

COG id: COG3679

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YLBF_BACSU (O34412)

Other databases:

- EMBL:   Z98682
- EMBL:   AL009126
- PIR:   C69874
- RefSeq:   NP_389382.1
- ProteinModelPortal:   O34412
- EnsemblBacteria:   EBBACT00000000124
- GeneID:   939945
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU14990
- NMPDR:   fig|224308.1.peg.1501
- GenoList:   BSU14990
- GeneTree:   EBGT00050000001160
- HOGENOM:   HBG313626
- OMA:   KYHPDYR
- ProtClustDB:   CLSK2752393
- BioCyc:   BSUB:BSU14990-MONOMER
- GO:   GO:0005737
- InterPro:   IPR010368

Pfam domain/function: PF06133 DUF964

EC number: NA

Molecular weight: Translated: 16914; Mature: 16914

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QRFGKYHPDYREISRKMREIKRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVK
HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VPTGNPYFDGLSSCGGGCGSGGSCGCKVS
CCCCCCHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QRFGKYHPDYREISRKMREIKRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVK
HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VPTGNPYFDGLSSCGGGCGSGGSCGCKVS
CCCCCCHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 10712692