Click here to switch to the map view.

The map label for this gene is ykoJ

Identifier: 16078393

GI number: 16078393

Start: 1394776

End: 1395288

Strand: Direct

Name: ykoJ

Synonym: BSU13280

Alternate gene names: 16078393

Gene position: 1394776-1395288 (Clockwise)

Preceding gene: 16078392

Following gene: 16078394

Centisome position: 33.09

GC content: 41.52

Gene sequence:

>513_bases
ATGCTCAAGAAAAAATGGATGGTCGGTCTTTTAGCAGGGTGCCTAGCGGCCGGAGGATTCAGCTACAACGCGTTTGCCAC
AGAAAACAATGAAAACAGACAGGCTTCTTCTAAGACGGATGCACTCACTGAACAAGAAGCAGAAGCAATTGCTAAAACAG
TTGTTGACGGCACAGTAGAAGACATTGACAGAGACCTTTACAACGGCAAAGAAGTCTATGAAGTGGAGATTGAAAAAGAA
GGTGAAGACTACGACGTTTATGTAGATATTCATACAAAACAAGCGCTTAATGACCCGTTAAAGGAGAAAGCAGAACAAGT
CGCCATAACCAAAGAAGAAGCTGAAGAAATTGCTTTAAAGCAAACAGGTGGAACCGTAACAGAAAGTAAGCTTGACGAAG
ATGACGGTGCTTACATCTATGAAATGGAAATCCAAACGAAGCAAGGAACTGAGACAGAATTTGAAATTTCCGCAAAAGAT
GGACGCATTATCAAACAGGAGATAGATGACTAA

Upstream 100 bases:

>100_bases
GAAGACTGACGGTTTCTCATCAAATTCTCATCTTGCTCTCGTTTTCCTTTCATGTTGAGTATGTAAACTGTACTCATACA
AAACAAAGGAGGGCTCACAA

Downstream 100 bases:

>100_bases
TCAAAACCCCCGCTGCAGCGGGGGTTTTTCATGATAAGAAACCTTCTTTTGGACAATCTAAGTAGAAAAGGAGGCGAAAC
GCATGGAAAAGAAAGAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MLKKKWMVGLLAGCLAAGGFSYNAFATENNENRQASSKTDALTEQEAEAIAKTVVDGTVEDIDRDLYNGKEVYEVEIEKE
GEDYDVYVDIHTKQALNDPLKEKAEQVAITKEEAEEIALKQTGGTVTESKLDEDDGAYIYEMEIQTKQGTETEFEISAKD
GRIIKQEIDD

Sequences:

>Translated_170_residues
MLKKKWMVGLLAGCLAAGGFSYNAFATENNENRQASSKTDALTEQEAEAIAKTVVDGTVEDIDRDLYNGKEVYEVEIEKE
GEDYDVYVDIHTKQALNDPLKEKAEQVAITKEEAEEIALKQTGGTVTESKLDEDDGAYIYEMEIQTKQGTETEFEISAKD
GRIIKQEIDD
>Mature_170_residues
MLKKKWMVGLLAGCLAAGGFSYNAFATENNENRQASSKTDALTEQEAEAIAKTVVDGTVEDIDRDLYNGKEVYEVEIEKE
GEDYDVYVDIHTKQALNDPLKEKAEQVAITKEEAEEIALKQTGGTVTESKLDEDDGAYIYEMEIQTKQGTETEFEISAKD
GRIIKQEIDD

Specific function: Unknown

COG id: COG3212

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YKOJ_BACSU (O35012)

Other databases:

- EMBL:   AJ002571
- EMBL:   AL009126
- PIR:   F69859
- RefSeq:   NP_389211.1
- ProteinModelPortal:   O35012
- EnsemblBacteria:   EBBACT00000000530
- GeneID:   936459
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU13280
- NMPDR:   fig|224308.1.peg.1330
- GenoList:   BSU13280
- GeneTree:   EBGT00050000003085
- HOGENOM:   HBG538633
- OMA:   YDVNVDA
- ProtClustDB:   CLSK887175
- BioCyc:   BSUB:BSU13280-MONOMER
- GO:   GO:0006508
- InterPro:   IPR005075

Pfam domain/function: PF03413 PepSY

EC number: NA

Molecular weight: Translated: 18955; Mature: 18955

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKKWMVGLLAGCLAAGGFSYNAFATENNENRQASSKTDALTEQEAEAIAKTVVDGTVE
CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
DIDRDLYNGKEVYEVEIEKEGEDYDVYVDIHTKQALNDPLKEKAEQVAITKEEAEEIALK
HHHHHHCCCCEEEEEEEECCCCCEEEEEEEECHHHHCCHHHHHHHHHCCCHHHHHHHHHH
QTGGTVTESKLDEDDGAYIYEMEIQTKQGTETEFEISAKDGRIIKQEIDD
HCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCEEECCCCCC
>Mature Secondary Structure
MLKKKWMVGLLAGCLAAGGFSYNAFATENNENRQASSKTDALTEQEAEAIAKTVVDGTVE
CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
DIDRDLYNGKEVYEVEIEKEGEDYDVYVDIHTKQALNDPLKEKAEQVAITKEEAEEIALK
HHHHHHCCCCEEEEEEEECCCCCEEEEEEEECHHHHCCHHHHHHHHHCCCHHHHHHHHHH
QTGGTVTESKLDEDDGAYIYEMEIQTKQGTETEFEISAKDGRIIKQEIDD
HCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377