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The map label for this gene is ykjA

Identifier: 16078371

GI number: 16078371

Start: 1374437

End: 1375168

Strand: Direct

Name: ykjA

Synonym: BSU13060

Alternate gene names: 16078371

Gene position: 1374437-1375168 (Clockwise)

Preceding gene: 16078369

Following gene: 16078372

Centisome position: 32.6

GC content: 43.85

Gene sequence:

>732_bases
GTGTTATGGATGGTATGGGTATTTTTACTGAAGCCAGTTATCGTATTTTCGATTGCATATATTTTGTTTCGGCTTGCCGG
TAAAAAAGCTGTGTCACAAATGAACAATTTTGACCTGCTTTTGACCTTCGCAATCGGAACCATTATCAGTGAGCCGATCC
TTACATCCAAGCTGCCGATGTCAATTTATTATGCGGGTGCTTTTTTGGTGCTTTATCTTATCATGAGCAAGCTCTCTTTA
TCTAATAAATGGCGATGGCTCCTAGTCGTGAGCCCGACTGTCCTAATCCGAAACGGGGATATTGATGAACGCGGCCTTCG
TAAAGAAAGGCTGACTGTTAATGAGCTGCTCGGAAAGCTGAGGGAAAAGGGCTATGCCGACCCGGCTGACATTGATCTTG
CTATCATTGAAGAAACGGGAGAAGTAAGCGTCATCCCGAAAGAGGAAGCGAGAGCGGTGCAGGTGCGGGATTTGAATATG
GAAGCTGAACGGAATTTTATCCCGATTCCGCTCATACTGGATGGCGAAATCCTTGATCATAATTTGAAATATCTCCAAAA
AAACCGATCCTGGCTGTTTGAGAAGCTTGAGGAAAAAGGGTACAGCCCCAAACTGCTGTCTTCGATTATCCTTGGCACGA
TGAATGCACGCGGTGATATATCCCTTGATTTAAATACCGCTAATGAACCGCAGCATGATCCTTACTTATATAAACCGGGA
AATAACAATTAA

Upstream 100 bases:

>100_bases
TGTTCAGGCGATATGCACGTTCGCCTAGACACTGATGCATAGAGGGCCTGCCACGGGGCACAATAGGCTCAATATGACCA
GCGGATGGAGGTAAAGATCG

Downstream 100 bases:

>100_bases
GATGGCTCTCTCTTGTAATGAGAGCTTTTTTCTTTTTTAAAGGGAATTTTTGTTTGGTGTCAAATGTACCTAGTTAGGAG
GGGAACTGAACATGAAGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF3

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MLWMVWVFLLKPVIVFSIAYILFRLAGKKAVSQMNNFDLLLTFAIGTIISEPILTSKLPMSIYYAGAFLVLYLIMSKLSL
SNKWRWLLVVSPTVLIRNGDIDERGLRKERLTVNELLGKLREKGYADPADIDLAIIEETGEVSVIPKEEARAVQVRDLNM
EAERNFIPIPLILDGEILDHNLKYLQKNRSWLFEKLEEKGYSPKLLSSIILGTMNARGDISLDLNTANEPQHDPYLYKPG
NNN

Sequences:

>Translated_243_residues
MLWMVWVFLLKPVIVFSIAYILFRLAGKKAVSQMNNFDLLLTFAIGTIISEPILTSKLPMSIYYAGAFLVLYLIMSKLSL
SNKWRWLLVVSPTVLIRNGDIDERGLRKERLTVNELLGKLREKGYADPADIDLAIIEETGEVSVIPKEEARAVQVRDLNM
EAERNFIPIPLILDGEILDHNLKYLQKNRSWLFEKLEEKGYSPKLLSSIILGTMNARGDISLDLNTANEPQHDPYLYKPG
NNN
>Mature_243_residues
MLWMVWVFLLKPVIVFSIAYILFRLAGKKAVSQMNNFDLLLTFAIGTIISEPILTSKLPMSIYYAGAFLVLYLIMSKLSL
SNKWRWLLVVSPTVLIRNGDIDERGLRKERLTVNELLGKLREKGYADPADIDLAIIEETGEVSVIPKEEARAVQVRDLNM
EAERNFIPIPLILDGEILDHNLKYLQKNRSWLFEKLEEKGYSPKLLSSIILGTMNARGDISLDLNTANEPQHDPYLYKPG
NNN

Specific function: Unknown

COG id: COG2323

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0702 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YKJA_BACSU (P49853)

Other databases:

- EMBL:   D78189
- EMBL:   AJ002571
- EMBL:   AL009126
- PIR:   F69856
- RefSeq:   NP_389189.1
- ProteinModelPortal:   P49853
- SMR:   P49853
- EnsemblBacteria:   EBBACT00000000093
- GeneID:   939857
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU13060
- NMPDR:   fig|224308.1.peg.1308
- GenoList:   BSU13060
- GeneTree:   EBGT00070000032082
- HOGENOM:   HBG344672
- OMA:   VFSIAYI
- PhylomeDB:   P49853
- ProtClustDB:   CLSK237271
- BioCyc:   BSUB:BSU13060-MONOMER
- InterPro:   IPR007353
- InterPro:   IPR023090

Pfam domain/function: PF04239 DUF421

EC number: NA

Molecular weight: Translated: 27708; Mature: 27708

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb515cc0)-; HASH(0xed30c30)-; HASH(0xd6f1dfc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWMVWVFLLKPVIVFSIAYILFRLAGKKAVSQMNNFDLLLTFAIGTIISEPILTSKLPM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCCH
SIYYAGAFLVLYLIMSKLSLSNKWRWLLVVSPTVLIRNGDIDERGLRKERLTVNELLGKL
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCHHCCHHHHHHHHHHHHHH
REKGYADPADIDLAIIEETGEVSVIPKEEARAVQVRDLNMEAERNFIPIPLILDGEILDH
HHCCCCCCCCCEEEEEECCCCEEEEECHHCCEEEEEECCCHHCCCEEEEEEEECCHHHHH
NLKYLQKNRSWLFEKLEEKGYSPKLLSSIILGTMNARGDISLDLNTANEPQHDPYLYKPG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEECCC
NNN
CCH
>Mature Secondary Structure
MLWMVWVFLLKPVIVFSIAYILFRLAGKKAVSQMNNFDLLLTFAIGTIISEPILTSKLPM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCCH
SIYYAGAFLVLYLIMSKLSLSNKWRWLLVVSPTVLIRNGDIDERGLRKERLTVNELLGKL
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCHHCCHHHHHHHHHHHHHH
REKGYADPADIDLAIIEETGEVSVIPKEEARAVQVRDLNMEAERNFIPIPLILDGEILDH
HHCCCCCCCCCEEEEEECCCCEEEEECHHCCEEEEEECCCHHCCCEEEEEEEECCHHHHH
NLKYLQKNRSWLFEKLEEKGYSPKLLSSIILGTMNARGDISLDLNTANEPQHDPYLYKPG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEECCC
NNN
CCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8682784; 9384377