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The map label for this gene is xtmA

Identifier: 16078322

GI number: 16078322

Start: 1325096

End: 1325893

Strand: Direct

Name: xtmA

Synonym: BSU12570

Alternate gene names: 16078322

Gene position: 1325096-1325893 (Clockwise)

Preceding gene: 16078321

Following gene: 16078323

Centisome position: 31.43

GC content: 42.48

Gene sequence:

>798_bases
ATGAAAACACAACAGCGCGAACAAGCATTAGCAATCTATCAACAACATCAAGGAAAGATCACAAATCGGGCGATTGCGGA
CACAATCGGTGTTTCCGCGAAAACAATCGGCATCTGGAAAAAACAAGACAAATGGAAAGAGGCGCTGTTTTCTGCGTCCA
AAAACGAACAAAAACAGCGCCCTATAAACAACGATGAATTAAATGAACGCCAGCGGCTGTTTTGCCTGTATTACGTCAAA
AGCTTCAATGCCACACAGTCAGCAATCAAAGCGGGCTATTCTCCGGACAGCGCTCATGTGACGGGCAGCCGACTCTTAAA
AAACGAAAAGGTCGCTGCTGAAATTAGACGCATTAAAAAAGAAATGGTCAATGAAATGTTTATTGAAGCGATGGATGTGC
TGCAGGTTTATATCAAGATCGCGTTTGCGGATATTACGGACTATGTGACCTTTGGAAAAAAAGAGGTCCAGGCTGTCGGG
AAATCGGGTCCGCTGTTTGATGAAGATGATAATCCGATTATGAAGGAAATCAGCTTTGTCGATGTCAAAGACTCCGGGCT
CGTTGATGGCACCATTGTAACGGAAGCAAAGCTTGGGAAAGAAGGCATTGCCATCAAGCTTGCAGATAAAATGAAGGCGC
TTGAGAAGCTATCCTTATATTTTGATTTGTTTCCAGATCAATTTAAACAAAAAATTGAAAATGAGAAATTGAAGCTTGCC
AAACAAAAAGCGGAGAAAACAGATGACAGCCAGGAGCCGATTGAAATTATGATCAAACGAAAAGAGCGCAAGTCATGA

Upstream 100 bases:

>100_bases
TTGCCACCTATAAGTGAATAGAGCATGACACTAAGCGGCTGGCTGATCAGCCGCTTTTATGAATAAACAACCATGCTGGA
GGTGGCGGTGATGCAGTAGC

Downstream 100 bases:

>100_bases
TTGTAAAAGAAATCAACCCTCATTTCGAAGATTACGTGTTCAATTGGGAGCAGACGTACCAGTTTCTTGTCGGCGGCTAC
GGCTCATCCAAAAGCTATCA

Product: PBSX defective prophage terminase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKTQQREQALAIYQQHQGKITNRAIADTIGVSAKTIGIWKKQDKWKEALFSASKNEQKQRPINNDELNERQRLFCLYYVK
SFNATQSAIKAGYSPDSAHVTGSRLLKNEKVAAEIRRIKKEMVNEMFIEAMDVLQVYIKIAFADITDYVTFGKKEVQAVG
KSGPLFDEDDNPIMKEISFVDVKDSGLVDGTIVTEAKLGKEGIAIKLADKMKALEKLSLYFDLFPDQFKQKIENEKLKLA
KQKAEKTDDSQEPIEIMIKRKERKS

Sequences:

>Translated_265_residues
MKTQQREQALAIYQQHQGKITNRAIADTIGVSAKTIGIWKKQDKWKEALFSASKNEQKQRPINNDELNERQRLFCLYYVK
SFNATQSAIKAGYSPDSAHVTGSRLLKNEKVAAEIRRIKKEMVNEMFIEAMDVLQVYIKIAFADITDYVTFGKKEVQAVG
KSGPLFDEDDNPIMKEISFVDVKDSGLVDGTIVTEAKLGKEGIAIKLADKMKALEKLSLYFDLFPDQFKQKIENEKLKLA
KQKAEKTDDSQEPIEIMIKRKERKS
>Mature_265_residues
MKTQQREQALAIYQQHQGKITNRAIADTIGVSAKTIGIWKKQDKWKEALFSASKNEQKQRPINNDELNERQRLFCLYYVK
SFNATQSAIKAGYSPDSAHVTGSRLLKNEKVAAEIRRIKKEMVNEMFIEAMDVLQVYIKIAFADITDYVTFGKKEVQAVG
KSGPLFDEDDNPIMKEISFVDVKDSGLVDGTIVTEAKLGKEGIAIKLADKMKALEKLSLYFDLFPDQFKQKIENEKLKLA
KQKAEKTDDSQEPIEIMIKRKERKS

Specific function: Functions as a terminase

COG id: COG3728

COG function: function code L; Phage terminase, small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaS and B.subtilis phage SPP1 terminase small subunit

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XTMA_BACSU (P39785)

Other databases:

- EMBL:   Z70177
- EMBL:   Z34287
- EMBL:   AL009126
- PIR:   H69734
- RefSeq:   NP_389139.1
- ProteinModelPortal:   P39785
- SMR:   P39785
- EnsemblBacteria:   EBBACT00000003504
- GeneID:   939835
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12570
- NMPDR:   fig|224308.1.peg.1258
- GenoList:   BSU12570
- GeneTree:   EBGT00050000000979
- HOGENOM:   HBG339230
- OMA:   YNVSINT
- ProtClustDB:   CLSK986519
- BioCyc:   BSUB:BSU12570-MONOMER
- InterPro:   IPR018925
- InterPro:   IPR005335

Pfam domain/function: PF10668 Phage_terminase; PF03592 Terminase_2

EC number: NA

Molecular weight: Translated: 30244; Mature: 30244

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQQREQALAIYQQHQGKITNRAIADTIGVSAKTIGIWKKQDKWKEALFSASKNEQKQR
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHHCCCCHHHCC
PINNDELNERQRLFCLYYVKSFNATQSAIKAGYSPDSAHVTGSRLLKNEKVAAEIRRIKK
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EMVNEMFIEAMDVLQVYIKIAFADITDYVTFGKKEVQAVGKSGPLFDEDDNPIMKEISFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCHHHHHHEEE
DVKDSGLVDGTIVTEAKLGKEGIAIKLADKMKALEKLSLYFDLFPDQFKQKIENEKLKLA
EECCCCCCCCEEEEHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
KQKAEKTDDSQEPIEIMIKRKERKS
HHHHHCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKTQQREQALAIYQQHQGKITNRAIADTIGVSAKTIGIWKKQDKWKEALFSASKNEQKQR
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHHCCCCHHHCC
PINNDELNERQRLFCLYYVKSFNATQSAIKAGYSPDSAHVTGSRLLKNEKVAAEIRRIKK
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EMVNEMFIEAMDVLQVYIKIAFADITDYVTFGKKEVQAVGKSGPLFDEDDNPIMKEISFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCHHHHHHEEE
DVKDSGLVDGTIVTEAKLGKEGIAIKLADKMKALEKLSLYFDLFPDQFKQKIENEKLKLA
EECCCCCCCCEEEEHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
KQKAEKTDDSQEPIEIMIKRKERKS
HHHHHCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377