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The map label for this gene is xre

Identifier: 16078316

GI number: 16078316

Start: 1321329

End: 1321670

Strand: Reverse

Name: xre

Synonym: BSU12510

Alternate gene names: 16078316

Gene position: 1321670-1321329 (Counterclockwise)

Preceding gene: 16078347

Following gene: 255767281

Centisome position: 31.35

GC content: 43.27

Gene sequence:

>342_bases
ATGATAGGCGGCAGATTGAAGAGTCTCAGAGGGAAAAGGACACAGGAAGAAATCGCATCACACATCGGTGTGTCACGGGC
ACGATATTCCCACTATGAAAACGGGCGAAGCGAACCCGATTACGACACACTCCAAAAGCTGGCTGATTACTTTCAAGTAA
CGACTGATTACTTATTAACGGGGAAAGACAAAAAATCCGATGACGATATGTTCTCAGATCCGGACCTGCAGCTTGCATAC
CGCGATATGCAGGATTTTTCCCCAGAAAGCAAACAGCAGGCCATCGAATTTATCAACTATTTAAAAGAAAAAGAGAAAAA
CCGCAAACCGAAAAATAAATAA

Upstream 100 bases:

>100_bases
AAGTTATTTTTGATACTTTTTTTATCATAACTTTATTTTGATACATTTTGTATCTATAATCATAAGTAACGTAGGGAGTT
TAAAAAAGAGAGGTCATAGT

Downstream 100 bases:

>100_bases
ATCGTTCTCTGTTCTCTAAAACATATAAAAAGTAGACCGATATAAAGAAAAAAGTGTTTATTTTTTAAAGAAAAGGGAAA
GATTTCTACACTACCTTCCA

Product: Phage PBSX transcriptional regulator

Products: NA

Alternate protein names: Putative pbsX repressor

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MIGGRLKSLRGKRTQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLLTGKDKKSDDDMFSDPDLQLAY
RDMQDFSPESKQQAIEFINYLKEKEKNRKPKNK

Sequences:

>Translated_113_residues
MIGGRLKSLRGKRTQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLLTGKDKKSDDDMFSDPDLQLAY
RDMQDFSPESKQQAIEFINYLKEKEKNRKPKNK
>Mature_113_residues
MIGGRLKSLRGKRTQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLLTGKDKKSDDDMFSDPDLQLAY
RDMQDFSPESKQQAIEFINYLKEKEKNRKPKNK

Specific function: Probable repressor. Necessary for the maintenance of the lysogenic state

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XRE_BACSU (P23789)

Other databases:

- EMBL:   M36478
- EMBL:   M36477
- EMBL:   Z34287
- EMBL:   Z70177
- EMBL:   AL009126
- PIR:   JQ0810
- RefSeq:   NP_389133.1
- ProteinModelPortal:   P23789
- SMR:   P23789
- EnsemblBacteria:   EBBACT00000003081
- GeneID:   936473
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12510
- NMPDR:   fig|224308.1.peg.1252
- GenoList:   BSU12510
- GeneTree:   EBGT00070000032227
- HOGENOM:   HBG727458
- OMA:   YENGRSE
- ProtClustDB:   CLSK887117
- BioCyc:   BSUB:BSU12510-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 13258; Mature: 13258

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGGRLKSLRGKRTQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLLT
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
GKDKKSDDDMFSDPDLQLAYRDMQDFSPESKQQAIEFINYLKEKEKNRKPKNK
CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIGGRLKSLRGKRTQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLLT
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
GKDKKSDDDMFSDPDLQLAYRDMQDFSPESKQQAIEFINYLKEKEKNRKPKNK
CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2125016; 8083174; 9384377