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The map label for this gene is yjdB

Identifier: 16078264

GI number: 16078264

Start: 1269733

End: 1270080

Strand: Reverse

Name: yjdB

Synonym: BSU11990

Alternate gene names: 16078264

Gene position: 1270080-1269733 (Counterclockwise)

Preceding gene: 16078269

Following gene: 16078256

Centisome position: 30.13

GC content: 35.34

Gene sequence:

>348_bases
ATGAATTTCAAAAAAACGGTTGTTTCTGCTTTATCGATTTCTGCGTTAGCTCTGTCGGTCAGCGGGGTAGCTTCAGCTCA
TGAAATAAACTCCACACCTACTGAAGTAAAGAACATTTCTATTTCACCTACACATGTTATCAAGATTCAAGACTATAATT
TACCTCTAAAAGTTGGAGAAACCTATTCTGTTAAAAATAATTCAGCTACTCGTTATTGGACTGATAACCAAAAAGTTGCT
GAAGTCGATCAAAATGGTTTAGTGACGGCTAAATCAAAAGGGAAAGCCACGATTACTTTGTTTAAAGGTACTGCAGTATT
CGGAAAAGTATATGTAACGGTTTATTAA

Upstream 100 bases:

>100_bases
TGATCGTTCACATATTATTAACATTTATTTACAAGGAAAATAATTACTTTTATTGAATTGTTATAGTGCAAGACAAAAAA
CTTTAAAGGAGTGTTTCAAA

Downstream 100 bases:

>100_bases
TCTTTATCCGCCAGATTTTCTGGATGCAAAACATGCATGAATAAAATAAGGTCCCCCTCTAAAAAGAGAAGGGACCTTAT
TTTCGCTTCAAGTTTAGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MNFKKTVVSALSISALALSVSGVASAHEINSTPTEVKNISISPTHVIKIQDYNLPLKVGETYSVKNNSATRYWTDNQKVA
EVDQNGLVTAKSKGKATITLFKGTAVFGKVYVTVY

Sequences:

>Translated_115_residues
MNFKKTVVSALSISALALSVSGVASAHEINSTPTEVKNISISPTHVIKIQDYNLPLKVGETYSVKNNSATRYWTDNQKVA
EVDQNGLVTAKSKGKATITLFKGTAVFGKVYVTVY
>Mature_115_residues
MNFKKTVVSALSISALALSVSGVASAHEINSTPTEVKNISISPTHVIKIQDYNLPLKVGETYSVKNNSATRYWTDNQKVA
EVDQNGLVTAKSKGKATITLFKGTAVFGKVYVTVY

Specific function: Unknown

COG id: COG5492

COG function: function code N; Bacterial surface proteins containing Ig-like domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJDB_BACSU (O31643)

Other databases:

- EMBL:   AL009126
- PIR:   E69848
- RefSeq:   NP_389081.1
- ProteinModelPortal:   O31643
- SMR:   O31643
- EnsemblBacteria:   EBBACT00000000063
- GeneID:   936431
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU11990
- NMPDR:   fig|224308.1.peg.1200
- GenoList:   BSU11990
- ProtClustDB:   CLSK2752373
- BioCyc:   BSUB:BSU11990-MONOMER
- InterPro:   IPR003343
- InterPro:   IPR008964
- SMART:   SM00635

Pfam domain/function: PF02368 Big_2; SSF49373 Invasin_intimin

EC number: NA

Molecular weight: Translated: 12394; Mature: 12394

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFKKTVVSALSISALALSVSGVASAHEINSTPTEVKNISISPTHVIKIQDYNLPLKVGE
CCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCEEECC
TYSVKNNSATRYWTDNQKVAEVDQNGLVTAKSKGKATITLFKGTAVFGKVYVTVY
EEEECCCCCEEEEECCCEEEEECCCCEEEECCCCCEEEEEEECCEEEEEEEEEEC
>Mature Secondary Structure
MNFKKTVVSALSISALALSVSGVASAHEINSTPTEVKNISISPTHVIKIQDYNLPLKVGE
CCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCEEECC
TYSVKNNSATRYWTDNQKVAEVDQNGLVTAKSKGKATITLFKGTAVFGKVYVTVY
EEEECCCCCEEEEECCCEEEEECCCCEEEECCCCCEEEEEEECCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377