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The map label for this gene is yhgC

Identifier: 16078074

GI number: 16078074

Start: 1083229

End: 1083729

Strand: Reverse

Name: yhgC

Synonym: BSU10100

Alternate gene names: 16078074

Gene position: 1083729-1083229 (Counterclockwise)

Preceding gene: 16078081

Following gene: 16078073

Centisome position: 25.71

GC content: 45.31

Gene sequence:

>501_bases
ATGAAGGTTTATATTACATATGGGACAGCCGATTTTTTAAAAACGATCGTACAGAAGCATCCCTCAGAAAATATCCTTTT
GATGCAGGGGCAGGAAAACGCCATTTTAATTCATGAAACAAACGGAGATACCGTTTTCCAGGCACCACACGCTTATGAAG
TCATTGACCAAGTCGGAGAGATCAAACATCCCGGTTTTGCAGTATTGAACAATATTGCCGTTACTCAGGAAGGGCGTCCG
CTGTTTGAAAACAGATTTAAAAACAGAGCGGGAAAAGTCGAAAACGAGCCTGGCTTTGAAGCAATTCGAGTGCTCCGTCC
GCTTGACAGTGACACCTATGTCATTCTGACCTTGTGGGAAACGGAAAGCGCCTTTCAAGACTGGCAGCAGTCCGGTTCTT
ACAAAGAAGCCCACAAAAAACGCGATACATCTGCCGGAATTGACACAACGTCGATCTTCTCCCGGCCTTCCTATGTCACC
ACATATTTCGCTGTCGAATAG

Upstream 100 bases:

>100_bases
AGGTAGTATGGGAAAAATTGTTTGGAATTATGTTCGAAGCACTCGCCAATAGAAACTTATACCATTGTTTTGATATACTA
GCAAGCAGGAGGTGGCTGAT

Downstream 100 bases:

>100_bases
CTGCCGGCATGTCCGGCAGCTTATTTTATTGGGAGGAAAGCAAAATGAAGCATACTTGCCCAGTCTGCGGGTTTAAGGAT
TGGCTGAACCGCCATATGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKVYITYGTADFLKTIVQKHPSENILLMQGQENAILIHETNGDTVFQAPHAYEVIDQVGEIKHPGFAVLNNIAVTQEGRP
LFENRFKNRAGKVENEPGFEAIRVLRPLDSDTYVILTLWETESAFQDWQQSGSYKEAHKKRDTSAGIDTTSIFSRPSYVT
TYFAVE

Sequences:

>Translated_166_residues
MKVYITYGTADFLKTIVQKHPSENILLMQGQENAILIHETNGDTVFQAPHAYEVIDQVGEIKHPGFAVLNNIAVTQEGRP
LFENRFKNRAGKVENEPGFEAIRVLRPLDSDTYVILTLWETESAFQDWQQSGSYKEAHKKRDTSAGIDTTSIFSRPSYVT
TYFAVE
>Mature_166_residues
MKVYITYGTADFLKTIVQKHPSENILLMQGQENAILIHETNGDTVFQAPHAYEVIDQVGEIKHPGFAVLNNIAVTQEGRP
LFENRFKNRAGKVENEPGFEAIRVLRPLDSDTYVILTLWETESAFQDWQQSGSYKEAHKKRDTSAGIDTTSIFSRPSYVT
TYFAVE

Specific function: Unknown

COG id: COG2329

COG function: function code R; Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHGC_BACSU (P38049)

Other databases:

- EMBL:   L10630
- EMBL:   Y14083
- EMBL:   AL009126
- PIR:   B40614
- RefSeq:   NP_388891.1
- ProteinModelPortal:   P38049
- SMR:   P38049
- EnsemblBacteria:   EBBACT00000001303
- GeneID:   939297
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU10100
- NMPDR:   fig|224308.1.peg.1010
- GenoList:   BSU10100
- GeneTree:   EBGT00050000000081
- HOGENOM:   HBG313778
- OMA:   LIHETNG
- ProtClustDB:   CLSK886994
- BioCyc:   BSUB:BSU10100-MONOMER
- GO:   GO:0005737
- InterPro:   IPR007138
- InterPro:   IPR011008

Pfam domain/function: PF03992 ABM; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 18828; Mature: 18828

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYITYGTADFLKTIVQKHPSENILLMQGQENAILIHETNGDTVFQAPHAYEVIDQVGE
CEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCEEEECCCHHHHHHHHHC
IKHPGFAVLNNIAVTQEGRPLFENRFKNRAGKVENEPGFEAIRVLRPLDSDTYVILTLWE
CCCCCHHHHHCEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEC
TESAFQDWQQSGSYKEAHKKRDTSAGIDTTSIFSRPSYVTTYFAVE
CHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEEEC
>Mature Secondary Structure
MKVYITYGTADFLKTIVQKHPSENILLMQGQENAILIHETNGDTVFQAPHAYEVIDQVGE
CEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCEEEECCCHHHHHHHHHC
IKHPGFAVLNNIAVTQEGRPLFENRFKNRAGKVENEPGFEAIRVLRPLDSDTYVILTLWE
CCCCCHHHHHCEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEC
TESAFQDWQQSGSYKEAHKKRDTSAGIDTTSIFSRPSYVTTYFAVE
CHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8335642; 9579061; 9384377