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The map label for this gene is yhaM

Identifier: 16078057

GI number: 16078057

Start: 1069042

End: 1069986

Strand: Direct

Name: yhaM

Synonym: BSU09930

Alternate gene names: 16078057

Gene position: 1069042-1069986 (Clockwise)

Preceding gene: 16078056

Following gene: 16078058

Centisome position: 25.36

GC content: 44.34

Gene sequence:

>945_bases
ATGGCTAAAGGGATTATGCTACATGAGGTTGGCGAACAGGTGGACCAGTATCTATTGATTAAATCCTCGACGAAAGGGAT
TGCAAGCAATGGAAAACCGTTTCTGACGCTGATGCTGCAAGACCAGTCAGGCGATATTGAAGCGAAGCTGTGGGATGCCA
AGCAAAGTGATGAAGTGACCTATGCGCCGCAGACGATTGTCAAGGTCGTCGGCGATGTTCACCATTATCGCGGACGCACC
CAGCTGAAGCTAAGAAATATCAGACCGGTAAGCGAGCAAGAAAACGTCAATATTGATGATTTTTTAGAAACCGCGCCGAT
TCCGAAAAATGAAATGATGGATACCATCACTCAATATATATTTGAAATGAAAAATCCGAATATCCAGCGAATCACAAGGT
TTTTGGTTAAAAAACACGAAGCTGAGTTTATGGATTATCCGGCGGCTACGAAAAACCACCATGAGTTTGTCTCAGGTTTG
GCGTATCATGTTGTCTCTATGCTGAACCTGGCGAAAGCAATAGCAGATTTATATCCTTCTCTTGATCGTGATCTGCTTTA
CGCCGGTGTTATCCTGCATGATCTTGGAAAAGTGAAGGAGCTGTCCGGCCCTGTTTCCACTTCATATACGGTTGAAGGCA
ATTTGCTCGGCCATATTTCCATCATGGTGACAGAGCTTTCAAAAGCGGCTGAGGAGCTTCAAATCGATTCTGAAGAGGTG
TTAATTCTTCAGCATTTGATTTTGAGTCACCACGGCAAAGCAGAATGGGGCAGCCCGAAACCGCCTATGGTGAAAGAAGC
GGAAATTCTTCACTATATAGACAATCTGGATGCAAAAATGAATATGATGGACAGAGCGCTTGAGCGCGTGAAGCCGGGCG
AGTATACTGAACGTGTATTTGCACTGGAAAACCGTTCCTTTTATAAACCGACATTTCATAAATAA

Upstream 100 bases:

>100_bases
AGCCAAATCATCCATTTGGTGTCATAAAAGAGGTTCTATAGCTGAAAATCGGTATGTGATATACTGGTATTATGTAAGAT
ACGGAGGGAGCTTTAATAGA

Downstream 100 bases:

>100_bases
CTTAAAAAGGACTGATGCTGACATATTCAGCTCAGTCCTTTTTGATGCGTCTTTCCCGCACATAACTCGTCTCATTCCCG
CATATGGTTAAGAATAAAGA

Product: 3'-5' exoribonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MAKGIMLHEVGEQVDQYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQSDEVTYAPQTIVKVVGDVHHYRGRT
QLKLRNIRPVSEQENVNIDDFLETAPIPKNEMMDTITQYIFEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEFVSGL
AYHVVSMLNLAKAIADLYPSLDRDLLYAGVILHDLGKVKELSGPVSTSYTVEGNLLGHISIMVTELSKAAEELQIDSEEV
LILQHLILSHHGKAEWGSPKPPMVKEAEILHYIDNLDAKMNMMDRALERVKPGEYTERVFALENRSFYKPTFHK

Sequences:

>Translated_314_residues
MAKGIMLHEVGEQVDQYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQSDEVTYAPQTIVKVVGDVHHYRGRT
QLKLRNIRPVSEQENVNIDDFLETAPIPKNEMMDTITQYIFEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEFVSGL
AYHVVSMLNLAKAIADLYPSLDRDLLYAGVILHDLGKVKELSGPVSTSYTVEGNLLGHISIMVTELSKAAEELQIDSEEV
LILQHLILSHHGKAEWGSPKPPMVKEAEILHYIDNLDAKMNMMDRALERVKPGEYTERVFALENRSFYKPTFHK
>Mature_313_residues
AKGIMLHEVGEQVDQYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQSDEVTYAPQTIVKVVGDVHHYRGRTQ
LKLRNIRPVSEQENVNIDDFLETAPIPKNEMMDTITQYIFEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEFVSGLA
YHVVSMLNLAKAIADLYPSLDRDLLYAGVILHDLGKVKELSGPVSTSYTVEGNLLGHISIMVTELSKAAEELQIDSEEVL
ILQHLILSHHGKAEWGSPKPPMVKEAEILHYIDNLDAKMNMMDRALERVKPGEYTERVFALENRSFYKPTFHK

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 35684; Mature: 35552

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGIMLHEVGEQVDQYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQSDEVT
CCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCEE
YAPQTIVKVVGDVHHYRGRTQLKLRNIRPVSEQENVNIDDFLETAPIPKNEMMDTITQYI
ECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
FEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEFVSGLAYHVVSMLNLAKAIADLYPS
HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDRDLLYAGVILHDLGKVKELSGPVSTSYTVEGNLLGHISIMVTELSKAAEELQIDSEEV
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHCCCCHHH
LILQHLILSHHGKAEWGSPKPPMVKEAEILHYIDNLDAKMNMMDRALERVKPGEYTERVF
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHH
ALENRSFYKPTFHK
HCCCCCCCCCCCCC
>Mature Secondary Structure 
AKGIMLHEVGEQVDQYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQSDEVT
CCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCEE
YAPQTIVKVVGDVHHYRGRTQLKLRNIRPVSEQENVNIDDFLETAPIPKNEMMDTITQYI
ECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
FEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEFVSGLAYHVVSMLNLAKAIADLYPS
HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDRDLLYAGVILHDLGKVKELSGPVSTSYTVEGNLLGHISIMVTELSKAAEELQIDSEEV
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHCCCCHHH
LILQHLILSHHGKAEWGSPKPPMVKEAEILHYIDNLDAKMNMMDRALERVKPGEYTERVF
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHH
ALENRSFYKPTFHK
HCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA