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The map label for this gene is yhdW

Identifier: 16078027

GI number: 16078027

Start: 1037688

End: 1038419

Strand: Reverse

Name: yhdW

Synonym: BSU09620

Alternate gene names: 16078027

Gene position: 1038419-1037688 (Counterclockwise)

Preceding gene: 16078031

Following gene: 16078026

Centisome position: 24.63

GC content: 44.81

Gene sequence:

>732_bases
TTGTACATCATTGCCCATCGCGGAGCATCCGGCTACGCTCCGGAAAATACGATTGCCGCATTTGACCTTGCGGTGAAAAT
GAATGCAGATATGATCGAACTGGATGTCCAGCTTACAAAAGACAGGCAGATTGTTGTGATACACGATGACAGGGTTGACC
GAACAACAAACGGATCGGGCTTTGTTAAGGATTTTACCTTGGAGGAATTGCAAAAACTCGATGCAGGAAGCTGGTACGGT
CCCGCTTTTCAAGGAGAGCGTATTCCAACCCTGGAAGCGGTGCTCAAGCGCTACCACAAAAAAATCGGCCTTTTAATTGA
ACTAAAAGGCCATCCGTCTCAAGTCGGAATTGAAGAAGAGGTGGGACAGCTATTAGGGCAATTTTCTTTTTCTATCAATA
ATATTGTTCAATCCTTTCAGTTCCGCTCCGTCCAAAGGTTCCGCGAGCTTTATCCTTCGATTCCGACAGCGGTCATTACA
AGGCCCAACTTTGGCATGCTGTCCAGAAATCAGATGAAGGCCTTCCGCTCTTTTGCAAACTATGTCAATATAAAACACAC
ACGGCTTAACCGTCTGATGATCGGCTCCATCAATAAAAATGGCTTAAACATATTTGCATGGACTGTCAACAATCAAAAGA
CAGCGGCAAAATTACAAGCCATGGGCGTGGACGGCATCGTTACAGATTACCCGGATTTCATCATAAAGGATGGCAAACAT
GAAAATATATAG

Upstream 100 bases:

>100_bases
ACCATTCCGATATGGCAGAAAAAATTCACCAGTTTGTATCGCGGTGCATATATGGATTTGATACAATAACAGAAATGCCC
ATACGAGGAGCTGACTTAGC

Downstream 100 bases:

>100_bases
CGCGGTTTTTATCGGAGGCGCGCTTGGCGCCTGCCTCCGATACGGATTAAACTTATGGATACACACCGGTCAGTTCCCGG
CGGCAACCTGGCTGGAAAAT

Product: glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MYIIAHRGASGYAPENTIAAFDLAVKMNADMIELDVQLTKDRQIVVIHDDRVDRTTNGSGFVKDFTLEELQKLDAGSWYG
PAFQGERIPTLEAVLKRYHKKIGLLIELKGHPSQVGIEEEVGQLLGQFSFSINNIVQSFQFRSVQRFRELYPSIPTAVIT
RPNFGMLSRNQMKAFRSFANYVNIKHTRLNRLMIGSINKNGLNIFAWTVNNQKTAAKLQAMGVDGIVTDYPDFIIKDGKH
ENI

Sequences:

>Translated_243_residues
MYIIAHRGASGYAPENTIAAFDLAVKMNADMIELDVQLTKDRQIVVIHDDRVDRTTNGSGFVKDFTLEELQKLDAGSWYG
PAFQGERIPTLEAVLKRYHKKIGLLIELKGHPSQVGIEEEVGQLLGQFSFSINNIVQSFQFRSVQRFRELYPSIPTAVIT
RPNFGMLSRNQMKAFRSFANYVNIKHTRLNRLMIGSINKNGLNIFAWTVNNQKTAAKLQAMGVDGIVTDYPDFIIKDGKH
ENI
>Mature_243_residues
MYIIAHRGASGYAPENTIAAFDLAVKMNADMIELDVQLTKDRQIVVIHDDRVDRTTNGSGFVKDFTLEELQKLDAGSWYG
PAFQGERIPTLEAVLKRYHKKIGLLIELKGHPSQVGIEEEVGQLLGQFSFSINNIVQSFQFRSVQRFRELYPSIPTAVIT
RPNFGMLSRNQMKAFRSFANYVNIKHTRLNRLMIGSINKNGLNIFAWTVNNQKTAAKLQAMGVDGIVTDYPDFIIKDGKH
ENI

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain

Homologues:

Organism=Homo sapiens, GI7706617, Length=163, Percent_Identity=36.8098159509202, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI260763876, Length=262, Percent_Identity=26.3358778625954, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI260763878, Length=101, Percent_Identity=40.5940594059406, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI260763880, Length=101, Percent_Identity=40.5940594059406, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1789858, Length=239, Percent_Identity=30.9623430962343, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788572, Length=83, Percent_Identity=42.1686746987952, Blast_Score=68, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17542344, Length=279, Percent_Identity=25.4480286738351, Blast_Score=80, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHDW_BACSU (O07592)

Other databases:

- EMBL:   Y14082
- EMBL:   AL009126
- PIR:   E69827
- RefSeq:   NP_388843.1
- ProteinModelPortal:   O07592
- SMR:   O07592
- EnsemblBacteria:   EBBACT00000003164
- GeneID:   939751
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU09620
- NMPDR:   fig|224308.1.peg.962
- GenoList:   BSU09620
- GeneTree:   EBGT00050000000804
- HOGENOM:   HBG725117
- OMA:   CIAPENT
- PhylomeDB:   O07592
- ProtClustDB:   CLSK886970
- BioCyc:   BSUB:BSU09620-MONOMER
- InterPro:   IPR004129
- InterPro:   IPR017946
- Gene3D:   G3DSA:3.20.20.190
- PANTHER:   PTHR23344

Pfam domain/function: PF03009 GDPD; SSF51695 PLC-like_Pdiesterase_TIM-brl

EC number: =3.1.4.46

Molecular weight: Translated: 27477; Mature: 27477

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIIAHRGASGYAPENTIAAFDLAVKMNADMIELDVQLTKDRQIVVIHDDRVDRTTNGSG
CEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCC
FVKDFTLEELQKLDAGSWYGPAFQGERIPTLEAVLKRYHKKIGLLIELKGHPSQVGIEEE
CEECCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHH
VGQLLGQFSFSINNIVQSFQFRSVQRFRELYPSIPTAVITRPNFGMLSRNQMKAFRSFAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
YVNIKHTRLNRLMIGSINKNGLNIFAWTVNNQKTAAKLQAMGVDGIVTDYPDFIIKDGKH
HHCEEEEEECEEEEECCCCCCCEEEEEEECCCHHHHHHHHCCCCCEECCCCCCEEECCCC
ENI
CCC
>Mature Secondary Structure
MYIIAHRGASGYAPENTIAAFDLAVKMNADMIELDVQLTKDRQIVVIHDDRVDRTTNGSG
CEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCC
FVKDFTLEELQKLDAGSWYGPAFQGERIPTLEAVLKRYHKKIGLLIELKGHPSQVGIEEE
CEECCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHH
VGQLLGQFSFSINNIVQSFQFRSVQRFRELYPSIPTAVITRPNFGMLSRNQMKAFRSFAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
YVNIKHTRLNRLMIGSINKNGLNIFAWTVNNQKTAAKLQAMGVDGIVTDYPDFIIKDGKH
HHCEEEEEECEEEEECCCCCCCEEEEEEECCCHHHHHHHHCCCCCEECCCCCCEEECCCC
ENI
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377