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The map label for this gene is yfhB

Identifier: 16077914

GI number: 16077914

Start: 922618

End: 923499

Strand: Direct

Name: yfhB

Synonym: BSU08470

Alternate gene names: 16077914

Gene position: 922618-923499 (Clockwise)

Preceding gene: 16077913

Following gene: 16077915

Centisome position: 21.89

GC content: 47.17

Gene sequence:

>882_bases
ATGAAAGAAGCAGAGGTATTAAAATATGAAGCATTTACAAGCAGTCCCGGCAAAGGAAACCCCGCAGGCGTCGTTTTGCA
GGGAGACGATTATACGGAAGACGAGATGCAGATCATAGCTGAACGTGCCGGGTATTCAGAAACCTCCTTTATCCGAAAAA
GCGAGTCGGCCGATCTTGAACTCCGTTACTTTACCCCTGGACACGAAATGAATTTGTGCGGTCATGCGACAGTTGCTTCT
CTTTACGCATTATGTGAGAAAGGAATGCTGGAGAGCGGTAAAACGTACAGCATCCAAACGAAAGCGGGTATCCTGCCTGT
GAAGATTTCTGAAAAAGATGGCCGCATTCATATCACGCTTGAACAGGCCTCTCCGCAATTCAAACCATTTACAGGCGATC
GGAAAAAACTTGCGGACGCACTGGGTATCACCGATGAAGATTTTCATGAAGACCTTCCGATTGTGTTTGGCAGCACTGGG
ATATGGACAGCCATCGTTCCGCTTAAATCATTGGAGGCTTCCAAAAAAATGGTGCCAGATAACAAACAATTTCCGGAAGT
GTTAGTTGATCTGCCAAAAGCTTCAGTCCATCCGTTTACCTTTGAAACCGTCCATCCCGACAGCGACCTGCACGGGCGCC
ACTTTTCATCCCCGTATTCGGGAACGATTGAAGACCCCGTGACCGGCACAGCATCCGGCGTGATGGGGGCTTATATGAAA
CATTATGGCAATGCCGAGCAGCATAAATTTATCATTGAACAAGGGCAGGAAATTGGAAAAGACGGAAAAGTGGAGATCGA
AATGAACGAAGCCGGCGGCCATGTGAAAGTGAACATGACAGGAACAGCCGTTTACTCAGAAACCCGTATTCTTAAAATCT
AA

Upstream 100 bases:

>100_bases
TTCTTAAAAAAGAAAATGGGTTTTTTTGATAATGACTGAAGATTCGTAATTATTTTTGCTATACTGACAGAGACATTGAT
AAAGAAAGGGCGGCAGATGA

Downstream 100 bases:

>100_bases
TACGGATGATGGTTTACAAAAAGATGCACTTTCCGTTATCATTATGAAATGATAATCATTTTCAATTGCATAGGAAGGTG
AGACGGTATGCCTCAAACCG

Product: isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MKEAEVLKYEAFTSSPGKGNPAGVVLQGDDYTEDEMQIIAERAGYSETSFIRKSESADLELRYFTPGHEMNLCGHATVAS
LYALCEKGMLESGKTYSIQTKAGILPVKISEKDGRIHITLEQASPQFKPFTGDRKKLADALGITDEDFHEDLPIVFGSTG
IWTAIVPLKSLEASKKMVPDNKQFPEVLVDLPKASVHPFTFETVHPDSDLHGRHFSSPYSGTIEDPVTGTASGVMGAYMK
HYGNAEQHKFIIEQGQEIGKDGKVEIEMNEAGGHVKVNMTGTAVYSETRILKI

Sequences:

>Translated_293_residues
MKEAEVLKYEAFTSSPGKGNPAGVVLQGDDYTEDEMQIIAERAGYSETSFIRKSESADLELRYFTPGHEMNLCGHATVAS
LYALCEKGMLESGKTYSIQTKAGILPVKISEKDGRIHITLEQASPQFKPFTGDRKKLADALGITDEDFHEDLPIVFGSTG
IWTAIVPLKSLEASKKMVPDNKQFPEVLVDLPKASVHPFTFETVHPDSDLHGRHFSSPYSGTIEDPVTGTASGVMGAYMK
HYGNAEQHKFIIEQGQEIGKDGKVEIEMNEAGGHVKVNMTGTAVYSETRILKI
>Mature_293_residues
MKEAEVLKYEAFTSSPGKGNPAGVVLQGDDYTEDEMQIIAERAGYSETSFIRKSESADLELRYFTPGHEMNLCGHATVAS
LYALCEKGMLESGKTYSIQTKAGILPVKISEKDGRIHITLEQASPQFKPFTGDRKKLADALGITDEDFHEDLPIVFGSTG
IWTAIVPLKSLEASKKMVPDNKQFPEVLVDLPKASVHPFTFETVHPDSDLHGRHFSSPYSGTIEDPVTGTASGVMGAYMK
HYGNAEQHKFIIEQGQEIGKDGKVEIEMNEAGGHVKVNMTGTAVYSETRILKI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family

Homologues:

Organism=Homo sapiens, GI62177133, Length=280, Percent_Identity=30.3571428571429, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI74316009, Length=256, Percent_Identity=30.078125, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1787737, Length=288, Percent_Identity=35.7638888888889, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFHB_BACSU (O31570)

Other databases:

- EMBL:   D85082
- EMBL:   AL009126
- PIR:   C69800
- RefSeq:   NP_388728.1
- ProteinModelPortal:   O31570
- SMR:   O31570
- EnsemblBacteria:   EBBACT00000003971
- GeneID:   936191
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08470
- NMPDR:   fig|224308.1.peg.847
- GenoList:   BSU08470
- GeneTree:   EBGT00050000002714
- HOGENOM:   HBG563743
- OMA:   QEIGKDG
- PhylomeDB:   O31570
- ProtClustDB:   CLSK873184
- BioCyc:   BSUB:BSU08470-MONOMER
- InterPro:   IPR003719
- PANTHER:   PTHR13774
- PIRSF:   PIRSF016184
- TIGRFAMs:   TIGR00654

Pfam domain/function: PF02567 PhzC-PhzF

EC number: NA

Molecular weight: Translated: 32130; Mature: 32130

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: ACT_SITE 47-47

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEAEVLKYEAFTSSPGKGNPAGVVLQGDDYTEDEMQIIAERAGYSETSFIRKSESADLE
CCCCCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHEECCCCCCEE
LRYFTPGHEMNLCGHATVASLYALCEKGMLESGKTYSIQTKAGILPVKISEKDGRIHITL
EEEECCCCCCCCCCHHHHHHHHHHHHCCHHCCCCEEEEEECCCEEEEEECCCCCEEEEEE
EQASPQFKPFTGDRKKLADALGITDEDFHEDLPIVFGSTGIWTAIVPLKSLEASKKMVPD
ECCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCEEEECCCCEEEEHHHHHHHHHHHCCCC
NKQFPEVLVDLPKASVHPFTFETVHPDSDLHGRHFSSPYSGTIEDPVTGTASGVMGAYMK
CCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
HYGNAEQHKFIIEQGQEIGKDGKVEIEMNEAGGHVKVNMTGTAVYSETRILKI
HCCCHHHHHHHHHCCHHHCCCCEEEEEECCCCCEEEEEEEEEEEECCEEEEEC
>Mature Secondary Structure
MKEAEVLKYEAFTSSPGKGNPAGVVLQGDDYTEDEMQIIAERAGYSETSFIRKSESADLE
CCCCCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHEECCCCCCEE
LRYFTPGHEMNLCGHATVASLYALCEKGMLESGKTYSIQTKAGILPVKISEKDGRIHITL
EEEECCCCCCCCCCHHHHHHHHHHHHCCHHCCCCEEEEEECCCEEEEEECCCCCEEEEEE
EQASPQFKPFTGDRKKLADALGITDEDFHEDLPIVFGSTGIWTAIVPLKSLEASKKMVPD
ECCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCEEEECCCCEEEEHHHHHHHHHHHCCCC
NKQFPEVLVDLPKASVHPFTFETVHPDSDLHGRHFSSPYSGTIEDPVTGTASGVMGAYMK
CCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
HYGNAEQHKFIIEQGQEIGKDGKVEIEMNEAGGHVKVNMTGTAVYSETRILKI
HCCCHHHHHHHHHCCHHHCCCCEEEEEECCCCCEEEEEEEEEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377