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The map label for this gene is yfiM

Identifier: 16077899

GI number: 16077899

Start: 906764

End: 907954

Strand: Direct

Name: yfiM

Synonym: BSU08320

Alternate gene names: 16077899

Gene position: 906764-907954 (Clockwise)

Preceding gene: 255767193

Following gene: 16077900

Centisome position: 21.51

GC content: 45.09

Gene sequence:

>1191_bases
ATGAAAAAAAGCATATGGATCGCATGGAAAGATGTGAAAATCAGAATCACGGACAGAAAAGGGTTTATGATGCTTATCCT
AATGCCGCTCATCCTAACCTGTATTTTAGGCGCAGCGCTCGGATCAGTTGTTGACGGAGGCAGCCGGATTGATGATATCA
AAGTCGGCTACATTCAATCAGACCAGTCAGATACAGCAAACATGTTTACAAAAGATGTTCTCAAAAAAATGAAGTCGATA
AAGGTCACAAAAGTCGGCAGCAAAGACAAGATGAAAAAACTGATTGATGAAAAGAAAATCGATGTAGGCATCGTTATCCC
GAACCATTGGGAAGCCGGCAAAACCTCAGCTGTTGTTAATGCCGCTCCTGATCAAACATTGAAAAGTTCCATCATTGAAA
CAGCTGCAAGCTCATTTATAGAGCAATATAAAGCGGTAAAGGAAGCCGCGTCAGGCTCAATGGACTACATCAGTAAAACG
GAAGCTGTAAAGCAAGGAAAACTTGACCCTGCACAGTTTGCAGAAAAGCTGGCAAAGACGCTAGAAAAAGAAACAGGTGA
CAAGCTTACTATTGCGGAAAAATCTGTCGGCAGCAAAGCCGTTACCAGTTTTCAATACTATTCGGCGGCAATGCTTTGCA
TGTTTATGCTGTTTCATATCACAGTCGGGGCGAAATCATTTTTACAGGAAAAGGATACGGAGACGCTTGCCAGAATGCTG
ATGACGCCTGCGCAAAAATCCGTCATTCTCTTCGGAAAATGGCTTGGGACGTATCTGTTTGCCATCATACAATTTTTCAT
ATTTCTGATCGTCACAATCAACGTATTTGGTGTGGACTGGGGCGGTAATCTGCTGTTAGTGAGTGTACTCGGGCTTTCTT
ACGCCGCAGCTGTATCTGGTATTTCAATGCTGCTTGCGTCGTGCATCAGCGATATGAAAACTGCAGATGCGATAGGCGGC
TTCGGCATTCAATTGCTTGCGGTTCTCGGCGGGTCCATGCTGCCGCTGTACCAATTTCCGGACGTCTTGCAGTCTGTATC
CAAAGCGGTGCCAAATCGCTGGGCGCTTGACGGCTTTCTTTCTTTAATGGAAGGGGGAGGCTGGGCTGACCTTCAAAAGC
CTGTGCTTCTTTTTGCGGCGATCGGCTTTTGTTCACTTGTAATTGGTATCAGACGGCTTCATACAAGATAA

Upstream 100 bases:

>100_bases
TCATATAAACCTGCTGTCTCTTCAGGTGCAGGAACCGAATCTGGAGCGCCTGTTTCTGAATCTGACCGGCCGCACGTTGC
GGGATTGAGGAGGGACGGCA

Downstream 100 bases:

>100_bases
GGAGGTACAAAAGGTGAAAAAAATTCTAGCCATTTGCGGCATTGAGCTTTCTCTCATTTTTAAGAAGCCACAGAACTATT
TGATCATGTTTGCTGCCCCG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MKKSIWIAWKDVKIRITDRKGFMMLILMPLILTCILGAALGSVVDGGSRIDDIKVGYIQSDQSDTANMFTKDVLKKMKSI
KVTKVGSKDKMKKLIDEKKIDVGIVIPNHWEAGKTSAVVNAAPDQTLKSSIIETAASSFIEQYKAVKEAASGSMDYISKT
EAVKQGKLDPAQFAEKLAKTLEKETGDKLTIAEKSVGSKAVTSFQYYSAAMLCMFMLFHITVGAKSFLQEKDTETLARML
MTPAQKSVILFGKWLGTYLFAIIQFFIFLIVTINVFGVDWGGNLLLVSVLGLSYAAAVSGISMLLASCISDMKTADAIGG
FGIQLLAVLGGSMLPLYQFPDVLQSVSKAVPNRWALDGFLSLMEGGGWADLQKPVLLFAAIGFCSLVIGIRRLHTR

Sequences:

>Translated_396_residues
MKKSIWIAWKDVKIRITDRKGFMMLILMPLILTCILGAALGSVVDGGSRIDDIKVGYIQSDQSDTANMFTKDVLKKMKSI
KVTKVGSKDKMKKLIDEKKIDVGIVIPNHWEAGKTSAVVNAAPDQTLKSSIIETAASSFIEQYKAVKEAASGSMDYISKT
EAVKQGKLDPAQFAEKLAKTLEKETGDKLTIAEKSVGSKAVTSFQYYSAAMLCMFMLFHITVGAKSFLQEKDTETLARML
MTPAQKSVILFGKWLGTYLFAIIQFFIFLIVTINVFGVDWGGNLLLVSVLGLSYAAAVSGISMLLASCISDMKTADAIGG
FGIQLLAVLGGSMLPLYQFPDVLQSVSKAVPNRWALDGFLSLMEGGGWADLQKPVLLFAAIGFCSLVIGIRRLHTR
>Mature_396_residues
MKKSIWIAWKDVKIRITDRKGFMMLILMPLILTCILGAALGSVVDGGSRIDDIKVGYIQSDQSDTANMFTKDVLKKMKSI
KVTKVGSKDKMKKLIDEKKIDVGIVIPNHWEAGKTSAVVNAAPDQTLKSSIIETAASSFIEQYKAVKEAASGSMDYISKT
EAVKQGKLDPAQFAEKLAKTLEKETGDKLTIAEKSVGSKAVTSFQYYSAAMLCMFMLFHITVGAKSFLQEKDTETLARML
MTPAQKSVILFGKWLGTYLFAIIQFFIFLIVTINVFGVDWGGNLLLVSVLGLSYAAAVSGISMLLASCISDMKTADAIGG
FGIQLLAVLGGSMLPLYQFPDVLQSVSKAVPNRWALDGFLSLMEGGGWADLQKPVLLFAAIGFCSLVIGIRRLHTR

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFIM_BACSU (P94441)

Other databases:

- EMBL:   D78508
- EMBL:   AL009126
- PIR:   H69803
- RefSeq:   NP_388713.1
- ProteinModelPortal:   P94441
- EnsemblBacteria:   EBBACT00000001205
- GeneID:   939210
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08320
- NMPDR:   fig|224308.1.peg.832
- GenoList:   BSU08320
- GeneTree:   EBGT00050000000921
- HOGENOM:   HBG343355
- OMA:   LASCISD
- ProtClustDB:   CLSK886894
- BioCyc:   BSUB:BSU08320-MONOMER
- InterPro:   IPR000412
- InterPro:   IPR013525

Pfam domain/function: PF01061 ABC2_membrane

EC number: NA

Molecular weight: Translated: 43115; Mature: 43115

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc78a1d8)-; HASH(0xd0ec4ac)-; HASH(0xdb4c2e0)-; HASH(0xd8bc024)-; HASH(0xd302ccc)-; HASH(0xcc2b594)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSIWIAWKDVKIRITDRKGFMMLILMPLILTCILGAALGSVVDGGSRIDDIKVGYIQS
CCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
DQSDTANMFTKDVLKKMKSIKVTKVGSKDKMKKLIDEKKIDVGIVIPNHWEAGKTSAVVN
CCCHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE
AAPDQTLKSSIIETAASSFIEQYKAVKEAASGSMDYISKTEAVKQGKLDPAQFAEKLAKT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
LEKETGDKLTIAEKSVGSKAVTSFQYYSAAMLCMFMLFHITVGAKSFLQEKDTETLARML
HHHHCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MTPAQKSVILFGKWLGTYLFAIIQFFIFLIVTINVFGVDWGGNLLLVSVLGLSYAAAVSG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHH
ISMLLASCISDMKTADAIGGFGIQLLAVLGGSMLPLYQFPDVLQSVSKAVPNRWALDGFL
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
SLMEGGGWADLQKPVLLFAAIGFCSLVIGIRRLHTR
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MKKSIWIAWKDVKIRITDRKGFMMLILMPLILTCILGAALGSVVDGGSRIDDIKVGYIQS
CCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
DQSDTANMFTKDVLKKMKSIKVTKVGSKDKMKKLIDEKKIDVGIVIPNHWEAGKTSAVVN
CCCHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE
AAPDQTLKSSIIETAASSFIEQYKAVKEAASGSMDYISKTEAVKQGKLDPAQFAEKLAKT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
LEKETGDKLTIAEKSVGSKAVTSFQYYSAAMLCMFMLFHITVGAKSFLQEKDTETLARML
HHHHCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MTPAQKSVILFGKWLGTYLFAIIQFFIFLIVTINVFGVDWGGNLLLVSVLGLSYAAAVSG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHH
ISMLLASCISDMKTADAIGGFGIQLLAVLGGSMLPLYQFPDVLQSVSKAVPNRWALDGFL
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
SLMEGGGWADLQKPVLLFAAIGFCSLVIGIRRLHTR
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377