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The map label for this gene is ycdA

Identifier: 16077347

GI number: 16077347

Start: 299438

End: 300502

Strand: Reverse

Name: ycdA

Synonym: BSU02780

Alternate gene names: 16077347

Gene position: 300502-299438 (Counterclockwise)

Preceding gene: 16077350

Following gene: 16077343

Centisome position: 7.13

GC content: 39.91

Gene sequence:

>1065_bases
ATGTTTCAGAAAAAAACGTACGCTGTTTTCCTAATTCTTCTGCTGATGATGTTTACAGCTGCTTGTTCCGGCAGCAAAAC
AAGCGCGGAGAAGAAAGAATCAGAAACAGAAAAAAGCTCAGATATAGCTCAAGTCAAAATCAAGGATGTCTCTTACACAC
TTCCGTCTAAATATGATAAGTCCACTTCAGATGACCAGCTTGTGTTAAAAGTCAATGTCGCGGTGAAAAACACAGGAAAA
GACCCGCTGAATGTAGACAGTATGGATTTCACATTGTATCAAGGTGATACCAAAATGTCTGACACAGACCCTGAAGACTA
TAGCGAAAAGCTTCAGGGCAGCACGATTAACGCTGACAAATCCGTTGAAGGAAATCTTTTCTTCGTTGTAGATAAAGGCA
AGCAATACGAGCTTAACTATACGCCGGAATCTTACGGTGATAAAAAGCCAAAATCAGTTACTTTTAAAATTGACGGAAAA
GACAAAAAAATCCTGGCGACGGCAGATAAGCTCCAAGATTCTGCAAAAGCGTTATCAGCTTATGTTGATGTCCTTCTTTT
CGGCAAAGATAACGCCGATTTCGAAAAAATCACCGGCGCTAACAAAAATGAAATTGTAAATGATTTTAATGAATCAGCCA
AAGACGGTTATCTCTCAGCTTCCGGCCTTTCCAGCACATATGCGGACAGCAAAGCGCTTGATAATATCGTGAACGGCATT
AAAGAGGGATTAAGCAAAAACTCTTCCATTCAAGCAAAAACGACTTCAATCTCTAAAGACGAAGCAATTGTTGAAGCCAC
AGTTAAACCTGTAGATGCATCTTCTCTTTCAGACCGCATCGAAGACAAAGTGAAAGACTACTACAGTAAAAACTCTAGTG
CCAGCTATGAAGAGGCAGTGAAATACGCGCTTCAAGTCTATCCTGAGGAATTCAAAAAGCTTGGACCTGCTTCATCTGAA
AAAACAGTTGAAGTGAAAATGAAGAAAAATGACATCGACCAATGGCAGCTTGATATGGATGATTACAGAGCAGCAGAATT
AGTCGAAGCATTCATCAAAGAATAA

Upstream 100 bases:

>100_bases
ACTGATTTTTTTGGTTATATGATGCTAATCCATTCAAAAAGATCCATTTCTCAAAGACAAAAGACTCCCCTTTCCTAAAC
CATTTGAGGAGGAAAAATGA

Downstream 100 bases:

>100_bases
AACACCAAAAGGAAATAGCCATGACGGCTATTTCCTTTTTTATTTGAAAATGTCGCTGATGAAATTCACTTCATCTTCGG
TCAGTTCAATGTTCAAGGTT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTGK
DPLNVDSMDFTLYQGDTKMSDTDPEDYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGK
DKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGI
KEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKNSSASYEEAVKYALQVYPEEFKKLGPASSE
KTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE

Sequences:

>Translated_354_residues
MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTGK
DPLNVDSMDFTLYQGDTKMSDTDPEDYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGK
DKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGI
KEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKNSSASYEEAVKYALQVYPEEFKKLGPASSE
KTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE
>Mature_354_residues
MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTGK
DPLNVDSMDFTLYQGDTKMSDTDPEDYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGK
DKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGI
KEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKNSSASYEEAVKYALQVYPEEFKKLGPASSE
KTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCDA_BACSU (O34538)

Other databases:

- EMBL:   AB000617
- EMBL:   AL009126
- PIR:   C69755
- RefSeq:   NP_388160.1
- ProteinModelPortal:   O34538
- SMR:   O34538
- EnsemblBacteria:   EBBACT00000003095
- GeneID:   938380
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU02780
- NMPDR:   fig|224308.1.peg.279
- GenoList:   BSU02780
- GeneTree:   EBGT00050000003010
- HOGENOM:   HBG345163
- OMA:   KNDIDQW
- ProtClustDB:   CLSK886640
- BioCyc:   BSUB:BSU02780-MONOMER
- InterPro:   IPR015250
- InterPro:   IPR021652
- Gene3D:   G3DSA:2.60.40.1240

Pfam domain/function: PF11611 TRF2

EC number: NA

Molecular weight: Translated: 39180; Mature: 39180

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDK
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCC
STSDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDTDPEDYSEKLQGSTINADK
CCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCC
SVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGKDKKILATADKLQDSAKALSA
CCCCCEEEEEECCCEEEEECCCHHCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHH
YVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGI
HHHEEEECCCCCCHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHH
KEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKNSSASYEEAV
HHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
KYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE
HHHHHHCCHHHHHCCCCCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQVKIKDVSYTLPSKYDK
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCC
STSDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDTDPEDYSEKLQGSTINADK
CCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCC
SVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGKDKKILATADKLQDSAKALSA
CCCCCEEEEEECCCEEEEECCCHHCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHH
YVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYLSASGLSSTYADSKALDNIVNGI
HHHEEEECCCCCCHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHH
KEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSLSDRIEDKVKDYYSKNSSASYEEAV
HHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
KYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQWQLDMDDYRAAELVEAFIKE
HHHHHHCCHHHHHCCCCCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377