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The map label for this gene is ybbH

Identifier: 16077237

GI number: 16077237

Start: 191183

End: 192034

Strand: Reverse

Name: ybbH

Synonym: BSU01690

Alternate gene names: 16077237

Gene position: 192034-191183 (Counterclockwise)

Preceding gene: 16077238

Following gene: 255767044

Centisome position: 4.56

GC content: 47.54

Gene sequence:

>852_bases
ATGGCCACAGGCGGTTTAGCGATCATCCAATCAATGAAGCATAAGCTCCCTCCATCCGAGCGCAAACTTGCAGATTATAT
CCTAGCCCATCCCCACAAAGCAATCGAAAGCACGGTCAACGAAATCAGCGCCTTAGCCAATTCAAGTGACGCTGCCGTCA
TCAGGCTCTGCAAATCACTCGGTTTAAAAGGATTTCAAGATTTAAAAATGAGAGTAGCAGGCGATCTGGCAAAGCCTACG
TTTCAGGGCTACCGGGATATTGTTCCCCACGAGCCGCTGCCCTCCATTTCCGAAAAAACGGCCGGCAATGCCATTCAAGC
CATTCAGGATACTTCAGACCTGATGGACTACAAAGAGCTTGAACGAGCGGTTTCTCTGCTTCTCAAAGCTCATACCGTGC
ATTTTATCGGCCTCGGGGCTTCCGGCATTGTCGCCAAGGACGCCCAGCAAAAGTGGCTTCGCATTCATAAACAAGCAACC
GCGTTTACAGACACTCATCTTGTGGCATCTTTAATCGCAAATGCAGATAAAGACGACATCGTATTCGCCATTTCGTTTTC
AGGAGAGACACAGGAAATCGTTGAACTGTTCGCCATGGCTAAGGAAAAAGGCATCACAACGATCAGCCTCACACAATTCA
GTCAGACATCCGTCTCCGCACTGGCTGATGTCCCTTTGTATACAGCCCATTCCAATGAAGCCTTGATTCGAAGTGCAGCC
ACTTCTTCCCGCCTCGCCCAGCTTTTTATAATTGATGTTTTGTTTTTAGGCATGGCGGCTGAGCAGTATGAAACGACAAC
CGGTTATATAGATAAAACGAGAGCAGCCATACAATCTATGAGAATAAAATAA

Upstream 100 bases:

>100_bases
AGCACAGATCAGAAACAAGCACAGACATTACTCGATGAAGCAAACGGTTTCATTGACAAAGCAATCGAACATTACCATCC
ATGATAAGGAGAGAACTAGA

Downstream 100 bases:

>100_bases
GGCATCTTGAAGGGGAGGGGTTTTAATGAGCAAAGAAAATAACTACCATCATCTCGCACAGAAAATCCTTGAGCTATGCG
GAGGAAAATCCAATATTTCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRVAGDLAKPT
FQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQAT
AFTDTHLVASLIANADKDDIVFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAA
TSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRIK

Sequences:

>Translated_283_residues
MATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRVAGDLAKPT
FQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQAT
AFTDTHLVASLIANADKDDIVFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAA
TSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRIK
>Mature_282_residues
ATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRVAGDLAKPTF
QGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATA
FTDTHLVASLIANADKDDIVFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAAT
SSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRIK

Specific function: Represses The Expression Of The Hex Regulon (Zwf, Eda, Glp And Gap) (By Similarity). [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain

Homologues:

Organism=Escherichia coli, GI1788159, Length=282, Percent_Identity=31.2056737588652, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788767, Length=260, Percent_Identity=26.9230769230769, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082130, Length=281, Percent_Identity=27.0462633451957, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87082369, Length=279, Percent_Identity=22.5806451612903, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YBBH_BACSU (Q45581)

Other databases:

- EMBL:   AB002150
- EMBL:   AL009126
- PIR:   C69744
- RefSeq:   NP_388050.1
- PDB:   2O3F
- PDBsum:   2O3F
- ProteinModelPortal:   Q45581
- EnsemblBacteria:   EBBACT00000000234
- GeneID:   938885
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU01690
- NMPDR:   fig|224308.1.peg.169
- GenoList:   BSU01690
- GeneTree:   EBGT00050000001935
- HOGENOM:   HBG725281
- OMA:   IANAGEN
- PhylomeDB:   Q45581
- ProtClustDB:   CLSK886589
- BioCyc:   BSUB:BSU01690-MONOMER
- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF01418 HTH_6; PF01380 SIS

EC number: NA

Molecular weight: Translated: 30710; Mature: 30578

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS51071 HTH_RPIR; PS51464 SIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSL
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
GLKGFQDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKEL
CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH
ERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDI
HHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAA
EEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEECCCCHHHHHHHH
TSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSL
CCCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
GLKGFQDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKEL
CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH
ERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDI
HHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAA
EEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEECCCCHHHHHHHH
TSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377