Click here to switch to the map view.

The map label for this gene is pal

Identifier: 15618690

GI number: 15618690

Start: 879195

End: 879773

Strand: Reverse

Name: pal

Synonym: CPn0781

Alternate gene names: 15618690

Gene position: 879773-879195 (Counterclockwise)

Preceding gene: 15618691

Following gene: 15618689

Centisome position: 71.51

GC content: 41.45

Gene sequence:

>579_bases
ATGAATATACATTCCCTATGGAAACTTTGTACTTTATTGGCTTTACTTGCATTGCCAGCATGTAGCCTTTCCCCTAATTA
TGGCTGGGAGGATTCCTGTAATACATGCCATCATACAAGACGAAAAAAGCCTTCTTCTTTTGGCTTTGTTCCTCTCTATA
CCGAAGAGGACTTTAACCCTAATTTTACCTTCGGTGAGTATGATTCCAAAGAAGAAAAACAATACAAGTCAAGCCAAGTT
GCAGCATTTCGTAATATCACCTTTGCTACAGACAGCTATACAATTAAAGGTGAAGAGAACCTTGCGATTCTCACGAACTT
GGTTCACTACATGAAGAAAAACCCGAAAGCTACACTGTACATTGAAGGGCATACTGACGAGCGTGGAGCTGCATCCTATA
ACCTTGCTTTAGGAGCACGACGAGCCAATGCGATTAAAGAGCATCTCCGAAAGCAGGGAATCTCTGCAGATCGTCTATCT
ACTATTTCCTACGGAAAAGAACATCCTTTAAATTCGGGACACAACGAACTAGCATGGCAACAAAATCGCCGTACAGAGTT
TAAGATTCATGCACGCTAA

Upstream 100 bases:

>100_bases
GTCTAGTCACCAAAAAAACTAACAAAATTGCTATAGGAGTAGGAGAAAAACGGTTCCCCTCCTGGGGTGCTTTCCCTCAG
CAACCGATAAAGAGAACACT

Downstream 100 bases:

>100_bases
GCTAAGCTTTTTTATTCTTCTAAGTCTGTTATTTTCAGGAATAGATTGCAGTCGTTTGCATGCTGCTGGAAGGTCTCCTT
CTCTACAAGGAGTCCTTGCA

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein [H]

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNIHSLWKLCTLLALLALPACSLSPNYGWEDSCNTCHHTRRKKPSSFGFVPLYTEEDFNPNFTFGEYDSKEEKQYKSSQV
AAFRNITFATDSYTIKGEENLAILTNLVHYMKKNPKATLYIEGHTDERGAASYNLALGARRANAIKEHLRKQGISADRLS
TISYGKEHPLNSGHNELAWQQNRRTEFKIHAR

Sequences:

>Translated_192_residues
MNIHSLWKLCTLLALLALPACSLSPNYGWEDSCNTCHHTRRKKPSSFGFVPLYTEEDFNPNFTFGEYDSKEEKQYKSSQV
AAFRNITFATDSYTIKGEENLAILTNLVHYMKKNPKATLYIEGHTDERGAASYNLALGARRANAIKEHLRKQGISADRLS
TISYGKEHPLNSGHNELAWQQNRRTEFKIHAR
>Mature_192_residues
MNIHSLWKLCTLLALLALPACSLSPNYGWEDSCNTCHHTRRKKPSSFGFVPLYTEEDFNPNFTFGEYDSKEEKQYKSSQV
AAFRNITFATDSYTIKGEENLAILTNLVHYMKKNPKATLYIEGHTDERGAASYNLALGARRANAIKEHLRKQGISADRLS
TISYGKEHPLNSGHNELAWQQNRRTEFKIHAR

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=180, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21926; Mature: 21926

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIHSLWKLCTLLALLALPACSLSPNYGWEDSCNTCHHTRRKKPSSFGFVPLYTEEDFNP
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCC
NFTFGEYDSKEEKQYKSSQVAAFRNITFATDSYTIKGEENLAILTNLVHYMKKNPKATLY
CCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCEEEECCCCHHHHHHHHHHHHCCCCEEEE
IEGHTDERGAASYNLALGARRANAIKEHLRKQGISADRLSTISYGKEHPLNSGHNELAWQ
EECCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
QNRRTEFKIHAR
CCCCCEEEEECC
>Mature Secondary Structure
MNIHSLWKLCTLLALLALPACSLSPNYGWEDSCNTCHHTRRKKPSSFGFVPLYTEEDFNP
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCC
NFTFGEYDSKEEKQYKSSQVAAFRNITFATDSYTIKGEENLAILTNLVHYMKKNPKATLY
CCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCEEEECCCCHHHHHHHHHHHHCCCCEEEE
IEGHTDERGAASYNLALGARRANAIKEHLRKQGISADRLSTISYGKEHPLNSGHNELAWQ
EECCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
QNRRTEFKIHAR
CCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800 [H]